PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00182.1_g00023.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

MYB_related

Protein Properties

Length: 183aa MW: 19904.5 Da PI: 9.5483

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00182.1_g00023.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.3	8.6e-14	105	149	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ q++ Sme2.5_00182.1_g00023.1 105 PWTEEEHRTFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQNH 149 8******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.206	98	154	IPR017930	Myb domain
SuperFamily	SSF46689	1.0E-15	99	154	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.6E-15	101	148	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.7E-12	102	149	IPR009057	Homeodomain-like
SMART	SM00717	5.5E-10	102	152	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-11	105	149	IPR001005	SANT/Myb domain
CDD	cd00167	6.30E-10	105	149	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MGRKCSHCGI TGHNSRTCKS DKTKNEDEKI IKANIGMMKL FGVEVEVASN SSWMKKSFSV 60 GCLSNSSKIS SSTAGSFASN YCDISNGYLS DELVGRNSYK KKGVPWTEEE HRTFLVGLEK 120 LGKGDWRGIS RNFVTTRTPT QVASHAQNHD ISVQDSRVPD LELTLAAPTR KGGLLAGSTI 180 TVI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00565	DAP	Transfer from AT5G56840	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010894	1e-47	AP010894.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0017M21, complete sequence.
GenBank	HG975520	1e-47	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009780709.1	2e-71	PREDICTED: myb-like protein H isoform X1
Refseq	XP_016450793.1	2e-71	PREDICTED: myb-like protein H isoform X1
Swissprot	Q7XC57	8e-38	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A1S3YFJ3	4e-70	A0A1S3YFJ3_TOBAC; myb-like protein H isoform X1
TrEMBL	A0A1U7X1F4	4e-70	A0A1U7X1F4_NICSY; myb-like protein H isoform X1
STRING	XP_009780709.1	6e-71	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3385	21	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	1e-44	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]