PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00187.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 184aa    MW: 21594.8 Da    PI: 4.5072
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00187.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-18552148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+W+ eEd +l++++ ++G g+W++ ar+ g++Rt+k+c++rw++yl
  Sme2.5_00187.1_g00005.1  5 RGPWSVEEDYILINYISRYGEGRWNSLARCAGLKRTGKSCRLRWLNYL 52
                             89********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.479156IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-21255IPR009057Homeodomain-like
SMARTSM007172.8E-15454IPR001005SANT/Myb domain
PfamPF002492.5E-16552IPR001005SANT/Myb domain
SuperFamilySSF466894.9E-22679IPR009057Homeodomain-like
CDDcd001671.20E-11752No hitNo description
Gene3DG3DSA:1.10.10.601.8E-55679IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MELRRGPWSV EEDYILINYI SRYGEGRWNS LARCAGLKRT GKSCRLRWLN YLRPNVRHGN  60
ITLEEQLLIL QLHSRWGNSS ATRSENMRTD ITEFVPIQLA NSNNNNSTLS TSVTTENTSM  120
TTLSENSIEA QVSPDQDYYQ VNQSDHQLWF EDYYQGMDQQ NNIQLWMDNE DIFNNLCNIE  180
DIWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-16211324128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9347342e-83EU934734.1 Solanum lycopersicum ABA-induced MYB transcription factor (AIM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349850.11e-68PREDICTED: transcription factor MYB108-like
TrEMBLM1A0332e-67M1A033_SOLTU; Uncharacterized protein
STRINGSolyc12g099130.1.11e-68(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.25e-35myb domain protein 78