PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00195.1_g00017.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 244aa    MW: 27896.5 Da    PI: 9.607
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00195.1_g00017.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.76.9e-41681882132
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 
                              a+kkdrhski T++g RdRRvRls+e+a++fFdLqd+LGfdk+skt++WL++++k ai e ++++s+++s +           +++
  Sme2.5_00195.1_g00017.1  68 AVKKDRHSKILTSQGHRDRRVRLSIEVARKFFDLQDMLGFDKPSKTLDWLFTKSKLAIEEVMSDESKKSSGT-----------PNN 142
                              89**************************************************************66666333...........444 PP

                      TCP  88 gkaaksaa.kskksqksaasalnlakesrakarararertrekmri 132
                              ++++ ++   + ++ ++ +++ +  kesrakar+rarert +k  +
  Sme2.5_00195.1_g00017.1 143 NSECDEDIiVPAPAVDELTKKTKQEKESRAKARERARERTIKKIWT 188
                              56667777677777888887788899**************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-3569139IPR005333Transcription factor, TCP
PROSITE profilePS5136933.87770128IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.889168185IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MFPFGNSNNG NPMLHSSPFL SNQILLHQQD LPITHHHYLG APNGNLIEND YLFSTNNVVI  60
DNKKIKKAVK KDRHSKILTS QGHRDRRVRL SIEVARKFFD LQDMLGFDKP SKTLDWLFTK  120
SKLAIEEVMS DESKKSSGTP NNNSECDEDI IVPAPAVDEL TKKTKQEKES RAKARERARE  180
RTIKKIWTQI APNREAQPSH YNNHIRNWNH HDEVTPTIMA APTSCCTSSP QVQKAWDSYL  240
GSQI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338278.11e-115PREDICTED: transcription factor DICHOTOMA-like
TrEMBLM1AMI91e-114M1AMI9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000260371e-114(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-24TCP domain protein 12