PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00196.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CO-like
Protein Properties Length: 457aa    MW: 50420.2 Da    PI: 6.5496
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00196.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.3e-06444539
                 zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                             +C+ ++e++ + +C++++ +lC +C  + H+       H++
  Sme2.5_00196.1_g00009.1  4 ICEYCGEQRSIVYCRSDSACLCLSCDRNVHSAnalsqrHSR 44
                             7*****************************65777777776 PP
2zf-B_box24.55.5e-084689440
                 zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40
                              +C++++++++   C + ++ lC++C  ++H +       H+++
  Sme2.5_00196.1_g00009.1 46 LICERCNSQPAVVRCIEERTSLCQNCDWSGHASsssgssmHKRQ 89
                             68*****************************7778888888875 PP
3CCT59.51.1e-20352395144
                      CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                              R +a+lRYkeK+ktRkF+K++rY sRKa+A+ R RvKGrFvk+ 
  Sme2.5_00196.1_g00009.1 352 RSNAVLRYKEKKKTRKFDKRVRYVSRKARADVRRRVKGRFVKAG 395
                              899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.727147IPR000315B-box-type zinc finger
CDDcd000217.50E-7447No hitNo description
SMARTSM003362.1E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.9164391IPR000315B-box-type zinc finger
CDDcd000210.001534773No hitNo description
SMARTSM003362.34891IPR000315B-box-type zinc finger
PROSITE profilePS5101715.021352394IPR010402CCT domain
PfamPF062033.8E-15352394IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MGYICEYCGE QRSIVYCRSD SACLCLSCDR NVHSANALSQ RHSRTLICER CNSQPAVVRC  60
IEERTSLCQN CDWSGHASSS SGSSMHKRQA LSCYTGCPSA AELSNIWSFL LDDPSIGDTC  120
EQRMGSMSIN DNHPRDGQGP QGKDNSQNAC AAVEVSDMNI SDKSNLLKES SMPSFDNKLH  180
NVEPPFGSSP KACYMGEKGS SLFDEDPYCD NLIMDAVDMG IENYEELFGD SLNYPDELFE  240
NENFDSFFRM NDIKGADSSC RGANAAEGSS IVRVNTVQPT CSDAASADSM VSCKTDSILY  300
FARQSSLSVS NQTGGECSAG DHQDCGVSPM LLMGEPPWCT PCPDISSSST SRSNAVLRYK  360
EKKKTRKFDK RVRYVSRKAR ADVRRRVKGR FVKAGDHVVS EQRSSKQIRH ASLCQLNNAA  420
EKRESSISGA HNQSSFQRVI KIHHEYVGLS HLLFLQI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251549.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_010313684.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-117COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLM1CT820.0M1CT82_SOLTU; B-box zinc finger protein 8
STRINGPGSC0003DMT4000741430.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.43e-89CONSTANS-like 9