PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00216.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 424aa    MW: 47572.6 Da    PI: 7.341
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00216.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
  Sme2.5_00216.1_g00001.1 14 KGLWSPEEDEKLIKHITKFGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                             678*******************************************97 PP
2Myb_DNA-binding44.53.5e-1467110146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg ++++E+ l++++++ lG++ W+ Ia++++ gRt++++k+ w++
  Sme2.5_00216.1_g00001.1  67 RGTFSQDEENLIIELHAVLGNK-WSQIAARLP-GRTDNEIKNLWNS 110
                              899*******************.*********.*********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-27664IPR009057Homeodomain-like
PROSITE profilePS5129424.969965IPR017930Myb domain
SuperFamilySSF466895.99E-2912108IPR009057Homeodomain-like
SMARTSM007174.9E-131363IPR001005SANT/Myb domain
PfamPF002493.4E-151461IPR001005SANT/Myb domain
CDDcd001671.74E-111761No hitNo description
Gene3DG3DSA:1.10.10.605.2E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129420.04966116IPR017930Myb domain
SMARTSM007175.8E-1366114IPR001005SANT/Myb domain
PfamPF002493.1E-1367110IPR001005SANT/Myb domain
CDDcd001674.88E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT KFGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQDEENLIIE LHAVLGNKWS QIAARLPGRT DNEIKNLWNS SLKKKLRQRG  120
IDPNTHKPLS EVESEDKASA NSNNKNNDKV SESSNNEFNF VDAHENGFST DKSIIKPAAS  180
SMINNMERYP LIHEANNIAP PTHEFFTTNC KSPDLSSYLS FHNYNPNTNI LFNTKTSTSA  240
DNMVSDHQFN CSSLPNATFS SMSSILSTTI SPLARTFNIN KFQNWEACTI SSNGSNNSNG  300
TSNSIELQSN CSFFDNNAAA TAFAWGPAGA TAADGSGKSE REEIKWSEYL QTPFSLGDNN  360
NTIDNHHQIP PHQELYDGQT KSETQFMTQG SWLQNQTPQT SLQTTDLYGN NNFQRLPAVF  420
GQFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067980.10.0transcription factor MYB61
TrEMBLA0A3Q7F9B40.0A0A3Q7F9B4_SOLLC; Uncharacterized protein
STRINGSolyc01g102340.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.18e-77myb domain protein 61