PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00232.1_g00011.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 224aa    MW: 24228.5 Da    PI: 6.6709
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00232.1_g00011.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof47.83.1e-1537643562
                   zf-Dof 35 aCrryWtkGGalrnvPvGggrrknkkss 62
                             +C ryWt+GG+lrnvPvGgg+rknk+s+
  Sme2.5_00232.1_g00011.1 37 NCPRYWTEGGSLRNVPVGGGSRKNKRSN 64
                             8************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-62656IPR003851Zinc finger, Dof-type
PfamPF027019.4E-103762IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDTSSQWPQG IGVVKGVETS SKLDERKPRP QKEQAINCPR YWTEGGSLRN VPVGGGSRKN  60
KRSNNNINNN NSNNNNSSSL SSPTSSSKKT LLSDLANPND LNLTYNPIHT ATTTACNFSS  120
FSDFMALPLS HPSANSAYSL NMPDSLYASS SVTTGLPDLK PSSINFCLDG FGGDHHEAKL  180
FFPMDDLKMN VSTANEGQFE ENRGQEAHQS NGFWNGMLGG GSSW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069116.16e-88dof zinc finger protein DOF4.6-like
TrEMBLA0A0V0HLL29e-85A0A0V0HLL2_SOLCH; Putative dof zinc finger protein DOF4.6-like
STRINGSolyc03g082840.2.17e-83(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.11e-10Dof family protein