PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00232.1_g00014.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 239aa    MW: 27262.8 Da    PI: 5.7541
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00232.1_g00014.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.24e-24153211259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               D+++WrKYG+K+  gs+f +sY+rC    +Cp+k++v++s++dp+ v++tY+++Hnh+
  Sme2.5_00232.1_g00014.1 153 TDQWRWRKYGKKPTGGSTFLKSYFRCNEVdDCPAKRHVQKSSTDPNKVIVTYRNQHNHP 211
                              69*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.801147213IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-24147213IPR003657WRKY domain
SuperFamilySSF1182905.36E-21151213IPR003657WRKY domain
SMARTSM007741.3E-24152212IPR003657WRKY domain
PfamPF031062.2E-19154211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAENENDWDL WAVVRSCSNM NNSVHDDNNV NSTSVLDDHG FHKDPTHENS VTNTQNTTLF  60
PEESDCVGDF TDWFPIENKH YFGLDEVISL SKNLNTNSGI EQVVVEHEEE EEKKKKKVRY  120
SMQSSSTGPG EAFPYRGKST ERYEILAEKL SETDQWRWRK YGKKPTGGST FLKSYFRCNE  180
VDDCPAKRHV QKSSTDPNKV IVTYRNQHNH PPPNQHIGMV HRSPNAAAPA EDPSFPSST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-131502141480Disease resistance protein RRS1
5w3x_D2e-131502141480Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165593.11e-131PREDICTED: WRKY transcription factor 22-like
TrEMBLM1DVX51e-130M1DVX5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000952711e-130(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA110911323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.14e-18WRKY DNA-binding protein 35