PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00236.1_g00016.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

GeBP

Protein Properties

Length: 204aa MW: 23772.1 Da PI: 4.7564

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00236.1_g00016.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	33.8	9.2e-11	113	196	13	97
DUF573 13 ivlLqGlidfkaktgkspsddidafyefvkksis.fkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +++L+ ++d+k ktg p+ ++ +++ s+ +k+s+++l +Ki + + +++ ++ ++++p ++++ dq++f+l+ ++Wg Sme2.5_00236.1_g00016.1 113 LAILRTIMDYKCKTGEFPHPPSGKLLDYIMYSLPyLKISRENLAKKIIAFENNYNDSWEL--DEDKPGLDRPVDQEMFNLCTRLWG 196 89***************************997479*******************..999******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05795	1.7E-7	13	176	IPR008780	Plasmodium vivax Vir
Pfam	PF04504	5.4E-7	112	196	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MLPEGESVPE NGCKNYDDDD KEGKKDVYGR KGNQDSEQGE RGKQGNQEPD KTEKGKTEEL 60 DSNGEHETKH ENEEERRRRA AEKGKRPMSK LGRFKGASDA DYYDYDCDFP QNLAILRTIM 120 DYKCKTGEFP HPPSGKLLDY IMYSLPYLKI SRENLAKKII AFENNYNDSW ELDEDKPGLD 180 RPVDQEMFNL CTRLWGDHKE FYDH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	M1DZG3	1e-57	M1DZG3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400096888	2e-58	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15523	6	7