PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00237.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 159aa    MW: 18373.7 Da    PI: 5.5241
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00237.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.71.3e-171562148
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                             k ie++  r vtfskR++g++KKA   S+L+ a+v v++fs++g+   
  Sme2.5_00237.1_g00003.1 15 KLIESEKARVVTFSKRKKGLFKKADDFSTLTRADVGVLLFSPSGRSSS 62
                             569****************************************98655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.857767IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-23766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.2E-23884IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-15929IPR002100Transcription factor, MADS-box
PfamPF003195.2E-201763IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-152944IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-154465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MEKRTGNGRQ KIELKLIESE KARVVTFSKR KKGLFKKADD FSTLTRADVG VLLFSPSGRS  60
SSYGSKSVKE ITDKFLELKQ DDRQGDDPNV DESNVFETFE DICKEKQALD EKEKEHPRSD  120
ILSDKERLEE YMALQSRLDK VYKNIKGKCI RELEEEESS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541016.16e-54PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A2G2V7B25e-55A0A2G2V7B2_CAPBA; Uncharacterized protein
STRINGPGSC0003DMT4000865542e-46(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-14AGAMOUS-like 61