PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00238.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 245aa    MW: 27318.1 Da    PI: 7.6388
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00238.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.31.4e-294106198
                   DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                              +C++C+vlr++C++dC l+p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +Pv+G+vg++ 
  Sme2.5_00238.1_g00001.1   4 SCNGCRVLRKGCSEDCSLRPCLqwiksPDSQANATVFLAKFYGRAGLINLINAGPQHLRPAIFRSLLYEACGRIINPVNGSVGLMC 89 
                              6************************************************************************************* PP

                   DUF260  82 klqqqleqlkaelallk 98 
                              ++++q +q ++e +l +
  Sme2.5_00238.1_g00001.1  90 SGNWQRCQDAVESVLKG 106
                              ********999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.3223109IPR004883Lateral organ boundaries, LOB
PfamPF031954.7E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS LRPCLQWIKS PDSQANATVF LAKFYGRAGL INLINAGPQH  60
LRPAIFRSLL YEACGRIINP VNGSVGLMCS GNWQRCQDAV ESVLKGSTIM QVPINNDDNN  120
NNNNDLVMPF RGCDIRHVSK NTSNQEVKTR NGRFKRKATL DATEEAEYMT LNEPPLKFSI  180
TGWDRYESMK NELKRSTSHD SFSVETVEPS LLANRIDLGQ PGLPVKLEED GDVGLELTLG  240
FMSQV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754442e-62HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755172e-62HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548850.11e-137PREDICTED: LOB domain-containing protein 42
TrEMBLA0A2G2VK711e-136A0A2G2VK71_CAPBA; LOB domain-containing protein 40
STRINGPGSC0003DMT4000377111e-129(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-72LOB domain-containing protein 41