PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00248.1_g00016.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 202aa    MW: 22354.2 Da    PI: 6.3929
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00248.1_g00016.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.13.3e-111762251
                      AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaark 51
                             +++GV++ +  g++ AeIrd +     + ++++lg f tae+A +a+++a++
  Sme2.5_00248.1_g00016.1 17 HFQGVWQLP-CGSYTAEIRDhV-----KgRNIWLGIFSTAEKAGRAYDNAAR 62
                             689******.7*********66.....44*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.1971774IPR001471AP2/ERF domain
CDDcd000189.14E-191776No hitNo description
SuperFamilySSF541712.94E-141775IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-181774IPR001471AP2/ERF domain
SMARTSM003801.1E-151780IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAQEKNNKAE VPLGNVHFQG VWQLPCGSYT AEIRDHVKGR NIWLGIFSTA EKAGRAYDNA  60
ARLFGSHPTK TNFPPDYLQT RDFLWKLDHN NAMSDHILPN HGSDIASSSG SSGDGVSFSL  120
LNQNSDEYCH FMTVTGTPIV MRKVRDRDLL ESLMKAGIIL PEQKMNSQKE TLDFMGLGAV  180
QPPTNSIEPP DLELRLAPPG SM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367737.17e-86PREDICTED: ethylene-responsive transcription factor ERF098-like
TrEMBLM1DNL32e-84M1DNL3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000918803e-85(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.19e-18erf domain protein 9