PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00250.1_g00012.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 323aa    MW: 36079.6 Da    PI: 5.9932
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00250.1_g00012.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1849100156
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                              + y+GVr++  +++Wv+e+r+ps+   +kr++lg++ t+e+Aa+a++ a+++l+g+
  Sme2.5_00250.1_g00012.1  49 PVYRGVRRRN-NNKWVCELREPSQ---QKRIWLGTYPTPEMAARAHDVAALALRGN 100
                              68*****887.8*********954...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.7E-144999IPR001471AP2/ERF domain
PROSITE profilePS5103221.56250107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2850109IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2150109IPR016177DNA-binding domain
SMARTSM003804.1E-2850113IPR001471AP2/ERF domain
PRINTSPR003674.7E-75162IPR001471AP2/ERF domain
CDDcd000183.77E-2851109No hitNo description
PRINTSPR003674.7E-77389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MNNHLSSYSA HLNPLSATTP SDEEGILLLA SSRPKKRAGR KKFKETRHPV YRGVRRRNNN  60
KWVCELREPS QQKRIWLGTY PTPEMAARAH DVAALALRGN LATLNFADSR WRSPVPASKD  120
PKDIRQAAVT AAQTYSQDHE LVGVDYMNEE AYSSTIEEVK YQEIDIARDD NGSSSDFGAK  180
ELNIDMANVL CCKWGEENEM SEMEGWRKKM AEGLLFSPTP RLGSCFSWDD VESDVEAKDT  240
TIDFMAFLDA FFRFPIQIFS PKTPYCHSGT DVDISTADVG IGFPVEATAL VNSQSFSSLA  300
AIGNLQVLYL GCLLGRACYR LGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083759.11e-150dehydration-responsive element-binding protein 1E-like
TrEMBLA0A3Q7HI061e-149A0A3Q7HI06_SOLLC; Uncharacterized protein
STRINGSolyc08g007820.1.11e-149(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.11e-42ERF family protein