PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00250.1_g00013.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 239aa    MW: 27061.9 Da    PI: 4.5649
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00250.1_g00013.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.4e-1953103256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr++  +++Wv+e+r+pse   +kr++lg++ t+e+Aa+a++ a+++l+g+
  Sme2.5_00250.1_g00013.1  53 IYRGVRRRN-NNKWVCEVREPSE---QKRIWLGTYPTPEMAARAHDVAALALRGN 103
                              69****887.8*********976...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.98E-2952112No hitNo description
PfamPF008479.7E-1452102IPR001471AP2/ERF domain
PROSITE profilePS5103221.58853110IPR001471AP2/ERF domain
SMARTSM003801.4E-2753116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-2953112IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-2153112IPR016177DNA-binding domain
PRINTSPR003672.9E-75465IPR001471AP2/ERF domain
PRINTSPR003672.9E-77692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MTSNTTNLER DHNLQETSSS SGGAQDEGAF QLASSRPKKC AGRKKFKETR HPIYRGVRRR  60
NNNKWVCEVR EPSEQKRIWL GTYPTPEMAA RAHDVAALAL RGNLATLNFA DSSWRLEVPT  120
SKDPEELRQA AMKAAEAFRQ DTELVGVDYM NEEMKSQEDI VVGGANGNDN NIQNMEMENI  180
LCCNNWGENN EMLEIEGSSS WQEKMAEGHL FSPTPCLDSC FSWDDVESDV EVTLWNYNM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754472e-65HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755202e-65HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358389.11e-132PREDICTED: dehydration-responsive element-binding protein 1F-like
TrEMBLM1AXQ11e-131M1AXQ1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000326231e-131(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.19e-45C-repeat-binding factor 4