PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00250.1_g00015.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 200aa    MW: 22253.6 Da    PI: 4.8087
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00250.1_g00015.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.16.8e-161766155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             s y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+++Aa+a++ a+++l+g
  Sme2.5_00250.1_g00015.1 17 SIYRGIR-CR-SGKWVSEIREPRK---TTRIWLGTYPTPQMAAAAYDVAALALKG 66
                             579***9.55.6*********843...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.95E-141777No hitNo description
SuperFamilySSF541712.42E-161776IPR016177DNA-binding domain
PfamPF008471.7E-91866IPR001471AP2/ERF domain
PROSITE profilePS5103219.2691875IPR001471AP2/ERF domain
SMARTSM003804.5E-261881IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-241876IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MADPSHATKS RTSTKHSIYR GIRCRSGKWV SEIREPRKTT RIWLGTYPTP QMAAAAYDVA  60
ALALKGTQNV VLNFPHHANS YPKLPPSPSP ADIQHAAATA ATMMAQKGND DQSSRSEEEA  120
TYNEGGSTES TLSENCPMQI ENRERINKEE EYVDEEALFD FPSLIVNMAE AMMLTPPRIN  180
SFPSEDYSSG DFDGENLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-131279876Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552063.19e-99PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ901e-41ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A2G2W2Y15e-99A0A2G2W2Y1_CAPBA; Uncharacterized protein
STRINGPGSC0003DMT4000326245e-90(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-39ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]