PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00254.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

M-type_MADS

Protein Properties

Length: 219aa MW: 24316.8 Da PI: 7.1794

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00254.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.2	3.7e-17	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +ien ++r++++ kR++g+l KA+EL +LCd+e a++++s+ Sme2.5_00254.1_g00002.1 10 FIENITKRKTSYRKRQKGLLSKAHELNTLCDVELAIVVYSP 50 8***************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	18.586	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.2E-18	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.76E-18	1	58	IPR002100	Transcription factor, MADS-box
CDD	cd00266	8.02E-20	2	57	No hit	No description
PRINTS	PR00404	3.1E-12	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.4E-16	10	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-12	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-12	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MTRAKVKLDF IENITKRKTS YRKRQKGLLS KAHELNTLCD VELAIVVYSP YHEAPKVHDA 60 EGSTLHAPQP ISGVIVGSGT SFDMPRAPLL ASVGDLSQVP SSFSSHMFPL IPHQMDLRRA 120 LEMTHPIPPT TMAYPMPSSA NDPPMSTLVF PPIAPKIHPS MNIPSINASM PIDNNHNRSF 180 ENPSFSQLLS LSDDDIRTLL DDTSFNINVQ DPNHHHRNL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010319833.1	2e-34	agamous-like MADS-box protein AGL65
TrEMBL	M1CD92	1e-38	M1CD92_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400065010	2e-39	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1329	10	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.2	6e-14	M-type_MADS family protein