PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00295.1_g00016.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

LBD

Protein Properties

Length: 216aa MW: 23254.4 Da PI: 8.4689

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00295.1_g00016.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.1	9.2e-41	35	134	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+Ca++C+++pyf +p+kfa+vhk+FGasnv+kll ++p +r da++slvyeA++r+rdPvyG++g i++lqqq Sme2.5_00295.1_g00016.1 35 PCAACKLLRRRCAEECPFSPYFSPYEPHKFAAVHKVFGASNVSKLLMEVPVGQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQ 120 7*********************************************************************************** PP DUF260 87 leqlkaelallkee 100 +++l++el+++++e Sme2.5_00295.1_g00016.1 121 IQNLQVELNAIRAE 134 *******99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.18	34	135	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-41	35	132	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MDISSNISQL HMQQQMGRRH VLGPGGGTTL NNVTPCAACK LLRRRCAEEC PFSPYFSPYE 60 PHKFAAVHKV FGASNVSKLL MEVPVGQRAD AANSLVYEAN VRLRDPVYGC MGAISTLQQQ 120 IQNLQVELNA IRAEILRYKY REAANSLIAS ISTSVAPELP QAPPTPPPPP PPPSMVVVSS 180 SSSSASSTSS NLYTPASSSV ANFSAITNNN ISYFDQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-45	28	142	4	118	LOB family transfactor Ramosa2.1
5ly0_B	5e-45	28	142	4	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-149	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	1e-149	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015078806.1	1e-125	LOB domain-containing protein 13
Swissprot	Q9AT61	5e-70	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A3Q7H202	1e-123	A0A3Q7H202_SOLLC; Uncharacterized protein
STRING	Solyc06g082430.1.1	1e-123	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	4e-72	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]