PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00324.1_g00009.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 554aa MW: 63597.8 Da PI: 5.1873

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00324.1_g00009.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.5	2.1e-56	6	134	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtdeelv++yLk+k++g+k+el evi+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWk Sme2.5_00324.1_g00009.1 6 LPPGFRFHPTDEELVSYYLKRKINGRKIEL-EVIPEVDLYKCEPWDLPdKsLLPSKDMEWYFFSPRDRKYPNGTRTNRATKAGYWK 90 79**************************.99**********96435566888************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 atgkd++v s + + +g+kktLv+y+grap+g++t Wvmheyrle Sme2.5_00324.1_g00009.1 91 ATGKDRKVNS-QMRPIGMKKTLVYYRGRAPHGTRTGWVMHEYRLE 134 *****9.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-63	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.655	6	156	IPR003441	NAC domain
Pfam	PF02365	3.3E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV SYYLKRKING RKIELEVIPE VDLYKCEPWD LPDKSLLPSK 60 DMEWYFFSPR DRKYPNGTRT NRATKAGYWK ATGKDRKVNS QMRPIGMKKT LVYYRGRAPH 120 GTRTGWVMHE YRLEERECEV ANGLQDAYAL CRVFKKSLNA VKIGDHYGSD RSGCSINDQL 180 YTEDSDYGMP TTASSSMLHH ASLPLTDDNK WMQYLSDEPN FTCNNNPTNA PFPYNHPSKV 240 DIALECARLQ HRFALPPLEV HDFPQVGYVM SQSNDVMYDH QSTTNPTDIV QEILSVAQAS 300 HDLTNQEYSW DGNYNNINYG DDFSFLPHTH NNHDLGNSFN FMDQLKEDDD HNNSIPIAHF 360 DEDFKSESMV ERLRWVGVSQ KDDQTFFEDY KTVPVENISG PHKEEQDQLQ GEASGQQNNL 420 NEREENNFSL GFGNDEHLLD DEDTDGFSSS PSFEVYEKIE VNQGMFIATR QAANTFYLQV 480 APSKTVTIHR DLVKVHDFPI RKITKSATFL ETFMALSRKT LLGVVMRVNW RGTVNSLVEL 540 IAPLQTFWSI LGNA

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV SYYLKRKING RKIELEVIPE VDLYKCEPWD LPDKSLLPSK  60
DMEWYFFSPR DRKYPNGTRT NRATKAGYWK ATGKDRKVNS QMRPIGMKKT LVYYRGRAPH  120
GTRTGWVMHE YRLEERECEV ANGLQDAYAL CRVFKKSLNA VKIGDHYGSD RSGCSINDQL  180
YTEDSDYGMP TTASSSMLHH ASLPLTDDNK WMQYLSDEPN FTCNNNPTNA PFPYNHPSKV  240
DIALECARLQ HRFALPPLEV HDFPQVGYVM SQSNDVMYDH QSTTNPTDIV QEILSVAQAS  300
HDLTNQEYSW DGNYNNINYG DDFSFLPHTH NNHDLGNSFN FMDQLKEDDD HNNSIPIAHF  360
DEDFKSESMV ERLRWVGVSQ KDDQTFFEDY KTVPVENISG PHKEEQDQLQ GEASGQQNNL  420
NEREENNFSL GFGNDEHLLD DEDTDGFSSS PSFEVYEKIE VNQGMFIATR QAANTFYLQV  480
APSKTVTIHR DLVKVHDFPI RKITKSATFL ETFMALSRKT LLGVVMRVNW RGTVNSLVEL  540
IAPLQTFWSI LGNA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-55	1	162	15	174	NAC domain-containing protein 19
3swm_B	1e-55	1	162	15	174	NAC domain-containing protein 19
3swm_C	1e-55	1	162	15	174	NAC domain-containing protein 19
3swm_D	1e-55	1	162	15	174	NAC domain-containing protein 19
3swp_A	1e-55	1	162	15	174	NAC domain-containing protein 19
3swp_B	1e-55	1	162	15	174	NAC domain-containing protein 19
3swp_C	1e-55	1	162	15	174	NAC domain-containing protein 19
3swp_D	1e-55	1	162	15	174	NAC domain-containing protein 19
4dul_A	1e-55	1	162	12	171	NAC domain-containing protein 19
4dul_B	1e-55	1	162	12	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC246741	0.0	AC246741.6 Solanum lycopersicum strain Heinz 1706 chromosome 2 clone slm-55o9 map 2, complete sequence.
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015165583.1	0.0	PREDICTED: NAC domain-containing protein 86-like
TrEMBL	M1BXQ9	0.0	M1BXQ9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400055322	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1495	23	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-146	NAC domain containing protein 28