PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00326.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YB
Protein Properties Length: 158aa    MW: 17603 Da    PI: 4.3596
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00326.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB751.2e-231194386
                    NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86
                             ++d+ lP a +++i+k++lP + ++++d+++++ ec +efi +v+se+++ c+re+++ti+++ ++ al  lGf dy+e++ + 
  Sme2.5_00326.1_g00003.1 11 KEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLVSSESNEVCNREEKRTIAPEHVIKALQVLGFGDYIEEVYAA 94
                             6899***************************************************************************98654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.0E-378139IPR009072Histone-fold
SuperFamilySSF471134.19E-3412140IPR009072Histone-fold
PfamPF008082.3E-201479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MEPMDIVGKA KEDASLPKAT MTKIIKEMLP PDVRVARDTQ DLLIECCVEF INLVSSESNE  60
VCNREEKRTI APEHVIKALQ VLGFGDYIEE VYAAYEQHKL ETMDTVRAGK CINGAEMTEE  120
EALAEQQRMF AEARARMNGG VTGPPKPQDS EAEQTLNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B5e-361213412133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754453e-75HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755183e-75HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241619.11e-110protein Dr1 homolog
RefseqXP_006354739.11e-110PREDICTED: protein Dr1 homolog
RefseqXP_015077062.11e-110protein Dr1 homolog
SwissprotP495922e-88NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A3Q7H0N51e-109A0A3Q7H0N5_SOLLC; Uncharacterized protein
TrEMBLM0ZY191e-109M0ZY19_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000104361e-109(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38202244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.41e-92nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]