PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00332.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

MYB_related

Protein Properties

Length: 455aa MW: 50571.3 Da PI: 7.642

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00332.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44	4.9e-14	251	295	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Sme2.5_00332.1_g00002.1 251 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 295 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50878	14.328	1	110	IPR000477	Reverse transcriptase domain
Pfam	PF00078	3.3E-13	2	77	IPR000477	Reverse transcriptase domain
Gene3D	G3DSA:3.30.70.270	6.1E-4	3	79	No hit	No description
SuperFamily	SSF56672	1.48E-6	4	75	No hit	No description
PROSITE profile	PS51294	17.997	244	300	IPR017930	Myb domain
SuperFamily	SSF46689	9.72E-17	246	300	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.7E-17	247	298	IPR006447	Myb domain, plants
SMART	SM00717	1.8E-10	248	298	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.2E-11	250	295	IPR009057	Homeodomain-like
CDD	cd00167	4.17E-9	251	296	No hit	No description
Pfam	PF00249	3.1E-11	251	295	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MGLHQGSMSS PFLFALVMDK LTRSIQEEVT LCILFADDIV LIDEMRTKVN DMWEAWRHAL 60 ESKGFKLSRT KTEFLECKFS VERDDANFDV RLATQPTIIQ IFAIWDGMLA NQKGTCPGDA 120 CYRDEDVAMD SFLLMNFEMR VPKKQPFYFY EVVVRRMSSA CSDKSSSTAA VTGGGFGGEI 180 MLFGVRVKVD PMRKSVSLNN LSQYEQPNAN NNNAGDNNES SKAAHEESYA SADDAVPHQS 240 NGGRERKRGV PWTEEEHKLF LLGLQKVGKG DWRGISRNFV KTRTPTQVAS HAQKYFLRRS 300 NLNRRRRRSS LFDITTDSVS VMPIGEGGNK EEIPALAPAA LPTVETTKTN AFSVAPAVAP 360 MMFPAQIDKS RENPTLLRHD HGNSSMLVGP VPIFPMPNPS TMIDLNANHN SAIEPSSLSL 420 RLSLSLDEGH ASSYRHSAYK AMSSFSNGES IIRVA

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MGLHQGSMSS PFLFALVMDK LTRSIQEEVT LCILFADDIV LIDEMRTKVN DMWEAWRHAL  60
ESKGFKLSRT KTEFLECKFS VERDDANFDV RLATQPTIIQ IFAIWDGMLA NQKGTCPGDA  120
CYRDEDVAMD SFLLMNFEMR VPKKQPFYFY EVVVRRMSSA CSDKSSSTAA VTGGGFGGEI  180
MLFGVRVKVD PMRKSVSLNN LSQYEQPNAN NNNAGDNNES SKAAHEESYA SADDAVPHQS  240
NGGRERKRGV PWTEEEHKLF LLGLQKVGKG DWRGISRNFV KTRTPTQVAS HAQKYFLRRS  300
NLNRRRRRSS LFDITTDSVS VMPIGEGGNK EEIPALAPAA LPTVETTKTN AFSVAPAVAP  360
MMFPAQIDKS RENPTLLRHD HGNSSMLVGP VPIFPMPNPS TMIDLNANHN SAIEPSSLSL  420
RLSLSLDEGH ASSYRHSAYK AMSSFSNGES IIRVA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-131	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015079146.1	1e-152	transcription factor MYB1R1
Swissprot	Q2V9B0	1e-148	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	Q53J25	1e-149	Q53J25_SOLLC; Putative DNA binding protein, identical
STRING	Solyc06g071230.2.1	1e-150	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	5e-51	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]