PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00333.1_g00014.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TCP

Protein Properties

Length: 237aa MW: 26599.5 Da PI: 10.2419

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00333.1_g00014.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	97.8	2e-30	35	148	2	120
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 g kdrhsk+ T +g+RdRRvRls+++a +++dLqd+LG+d++sk +eWLl++ak++i++l++++ ++ +e+ + ++ + + Sme2.5_00333.1_g00014.1 35 FGTKDRHSKVVTLKGLRDRRVRLSVPTALQLYDLQDKLGLDQPSKVVEWLLKEAKHEIDKLPQLQIPPIREAgLPLTELLKLN--- 117 589*************************************************************7777655543333333333... PP TCP 87 sgkaaksaakskksqksaasalnlakesrakara 120 +++++a s+ +k+++++ +++e k +a Sme2.5_00333.1_g00014.1 118 ---HRPTNALSSTLRKDEETMVVVSDEYGVKLNA 148 ...2333333334444444444444444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.2E-30	36	145	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.991	37	95	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MITRGVDPSD NITKFPKKAN SRLKDPRIVC VPRAFGTKDR HSKVVTLKGL RDRRVRLSVP 60 TALQLYDLQD KLGLDQPSKV VEWLLKEAKH EIDKLPQLQI PPIREAGLPL TELLKLNHRP 120 TNALSSTLRK DEETMVVVSD EYGVKLNARN LDLINHLKGT SNSNSNRNSF TFAPSYQNDF 180 LSRPVSLGHS GSRHGVEEIQ NFNVVAALPS TMYNMPLSSQ VVVYSPAGLP QYVFHPQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-20	42	96	1	55	Putative transcription factor PCF6
5zkt_B	3e-20	42	96	1	55	Putative transcription factor PCF6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC246813	1e-75	AC246813.7 Solanum lycopersicum strain Heinz 1706 chromosome 2 clone slm-33h20 map 2, complete sequence.
GenBank	HG975514	1e-75	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016561903.1	4e-88	PREDICTED: transcription factor TCP13-like isoform X1
Refseq	XP_016561905.1	3e-88	PREDICTED: transcription factor TCP13-like isoform X2
Refseq	XP_016561906.1	3e-88	PREDICTED: transcription factor TCP13-like isoform X2
TrEMBL	A0A2G3D3C1	8e-89	A0A2G3D3C1_CAPCH; Transcription factor TCP17
STRING	PGSC0003DMT400068332	7e-84	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA821	24	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	8e-37	plastid transcription factor 1