PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00368.1_g00014.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 184aa    MW: 20965.8 Da    PI: 4.7542
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00368.1_g00014.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26022.53.2e-07120174155
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeere 55 
                              +C++C   r++C++ C +++ +p ++   ++++ k +G  ++l  l+ +p+ ++ 
  Sme2.5_00368.1_g00014.1 120 KCSVCDQARKTCEPYCQYRQTLPLSKLFGYKAAIKTYGKPRLLGWLELIPQIKKA 174
                              5*******************************************99998887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.589119184IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEDDHIVRQD TANEGLQPDQ FLDFLDMPPL EEHNLGINQH IPWQEAGNVV GGPLDDHAVR  60
QDIQELECLQ ADQFLNILDM PPLEEHNHAI NQHIPWQEAG NVVGGPLQDQ HDEIFPAFIK  120
CSVCDQARKT CEPYCQYRQT LPLSKLFGYK AAIKTYGKPR LLGWLELIPQ IKKARISTIG  180
LKIQ