PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00378.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 79aa    MW: 9202.87 Da    PI: 10.7157
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00378.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY29.51.5e-092546122
                             ---SS-EEEEEEE--TT-SS-E CS
                     WRKY  1 ldDgynWrKYGqKevkgsefpr 22
                             ldDgy+WrKYG+K+vk +++ r
  Sme2.5_00378.1_g00006.1 25 LDDGYKWRKYGKKKVKTNTNLR 46
                             59***************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.2E-101146IPR003657WRKY domain
SuperFamilySSF1182907.06E-81846IPR003657WRKY domain
PROSITE profilePS5081110.1312046IPR003657WRKY domain
PfamPF031061.2E-52646IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MGIEKGQKGE KHAIAFRTKT QLEILDDGYK WRKYGKKKVK TNTNLRCDKI MNEIIPEGLR  60
VASVANKMKE VRLKWFGHV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4682564e-48CU468256.3 S.lycopersicum DNA sequence from clone LE_HBa-66O12 on chromosome 4, complete sequence.
GenBankHG9755164e-48HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016556084.16e-22PREDICTED: probable WRKY transcription factor 51
TrEMBLA0A2G3CN914e-21A0A2G3CN91_CAPCH; Putative WRKY transcription factor 59
STRINGSolyc04g072070.2.15e-20(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134941217