PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00417.1_g00017.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

LBD

Protein Properties

Length: 198aa MW: 21718.6 Da PI: 6.4779

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00417.1_g00017.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.9	3.7e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlrr+C+++C+l+ ++ p +q +++ +v k+FG+s ++++++a+p+++r+++++sl++eA+ r+ +Pv Gavg+++ Sme2.5_00417.1_g00017.1 2 SCSGCRVLRRRCSDNCTLRTCLdgindPRAQGNATIFVSKFFGRSDLMSFIAAVPQNRRPALFKSLLFEACGRTVNPVTGAVGLLS 87 6***********************99****************************************************** PP DUF260 82 klqqqleqlkaelall 97 +++++l+q++++++l+ Sme2.5_00417.1_g00017.1 88 TGNWHLCQKAVQTVLA 103 *******9998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.078	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MSCSGCRVLR RRCSDNCTLR TCLDGINDPR AQGNATIFVS KFFGRSDLMS FIAAVPQNRR 60 PALFKSLLFE ACGRTVNPVT GAVGLLSTGN WHLCQKAVQT VLAGGNPRQV FTGIITPPYF 120 DDSFECGGAW DIPNQFPHKY GSDQIEATEW ISSERRWNTS SSFGSETELS DVTLCLDSGM 180 GYTDGVKGEE PKLLNLFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	4e-72	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006362058.1	1e-121	PREDICTED: LOB domain-containing protein 38-like
Refseq	XP_015072913.1	1e-121	LOB domain-containing protein 38-like
Swissprot	Q9SN23	2e-48	LBD38_ARATH; LOB domain-containing protein 38
Swissprot	Q9SZE8	2e-48	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	M1BXU3	1e-120	M1BXU3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400055393	1e-121	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	7e-51	LOB domain-containing protein 39