PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00418.1_g00007.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

MYB_related

Protein Properties

Length: 1589aa MW: 177219 Da PI: 8.7756

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00418.1_g00007.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.3	4.1e-09	1474	1521	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +l+d+v+q+G g+W+ I + +Rt+ ++k++w+++l Sme2.5_00418.1_g00007.1 1474 WTVSEVRKLIDGVAQYGVGRWSHIKKLYFsssAHRTPVDLKDKWRNLL 1521 *************************999**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.300	1.1E-45	461	694	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SuperFamily	SSF52540	2.79E-40	462	690	IPR027417	P-loop containing nucleoside triphosphate hydrolase
CDD	cd03213	1.12E-69	463	690	No hit	No description
PROSITE profile	PS50893	16.854	466	708	IPR003439	ABC transporter-like
Pfam	PF00005	6.3E-22	485	635	IPR003439	ABC transporter-like
SMART	SM00382	1.5E-11	492	684	IPR003593	AAA+ ATPase domain
PROSITE pattern	PS00211	0	607	621	IPR017871	ABC transporter, conserved site
PROSITE profile	PS51294	15.79	1466	1525	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.4E-13	1468	1528	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-11	1470	1523	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.89E-16	1473	1531	IPR009057	Homeodomain-like
CDD	cd11660	5.34E-20	1474	1522	No hit	No description
Pfam	PF00249	4.1E-7	1474	1521	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity

Sequence ? help Back to Top
Protein Sequence Length: 1589 aa Download sequence Send to blast
MILVLGFSPC VWCAPASNQA LANANPTAVP ILASFIYNQL ANLTKVFHKD ITQALGFCID 60 DVDAELFEAF NFAKNLEFLN NCFKETKDVT QRLCNAAEMK YYFSIFLDAK STKQTEALRP 120 NRNCNLTSWI DGCEPGWSCS VGKNEKLDLK NAKDIPDRTH DEQPCCEGFF CPRGLTCMMP 180 CPLGAYCPRA TLNKTTGVCE PKFPDIHTNY LQERQNTLVE QLIIGVVKQT VGSYSAHQDL 240 TVQLPPKRLF ARKEITVGRA LQHREGALSF ILIIFYNCSD QVINTKYQRV AKSREAAARH 300 ARETAQARQR WGLVKDVAKK RTLGLQQQLS RTFSKKTSVK QGPRGGFNLP KTNDEASAIP 360 PKPPGSSAGK GKKKEPSALT KMMHSIENET DNAEGFHMQI GDKNIKKQAV NAKNLHTRSQ 420 IFKYAYGQLE KEKAMEQKTK NMTFSGVISM ATNENTELKT RPPIEVAFKD LTITLKKKHK 480 HLMRSVTGKL MPGRISAVMG PSGAGKTTFL SAVTGKLTQC TLSGIVLING RTESIHSYKK 540 IIGFVAQDDI VHGDLTVEEN LRFNARCRLA ADLPKADKVL VVERVIESLG LQAVRDSLVG 600 SVEKRGISGG QRKRVNVGME MVMEPSLLIL DEPTSGLDSS SSNLLLKALR REALEGVNIC 660 MVVHQPSYTL YKMFDDLVLL AKGGLVAYHG PVKKVEEYFA NLGITVPDRV NPPDHFIDIL 720 EGMVKPGGGV TVEQLPVRWM LHNGYPVPPD MMQLCDQIAM SSKGVVAAPD QSFSVDWHEK 780 RDSLSHGLLK SHDLSNRITP GINRQYRYYL GRVGKQRLRE AQIQAADYLI LLVAGACLGI 840 LSNQKGDTFG YYGYMYSVIA VSLLCKISAL RSFSLDKLEY WRERESGMSS LAYFLSKDTI 900 DHFNTVIKPL VFLSMFYFLN SPRSSFGANY LVYLCLVYCV TGIAYVFAIC FAAGQAQLWC 960 VLVPVVLTLI ANQEPDGTVG KYIAKFCYPR WALEAFVVAS AQRIFTASSK ISGLLFSLKL 1020 TSFLSIFLLC IFIFLGQNSA FRSGFASLGV WFDETETRDD HASISGVLCF DEKRVLKGME 1080 RKGALYNIGS NIASKRENEI NQQKKKLLSS IFLLEEPVSN CTSGIPYQVF LAFLFFYACE 1140 EVLDLKRSQF EAGKIQTQND LSTPCEDYLL DIEFAESITN LDYDSSRGLL DPILESQIPL 1200 SSCDGADTCG MPYSSGLVVQ EAQSQNAMFG LTNSELHDLS RDKCESQLLV EYNAVKFPTA 1260 FNPGDISNVD DVAGFFAEAA SSEKMNDSMI DHSALTSNRI PFMSNATLIE GQDVNGESFD 1320 LHESSVISPP VTSQAINTDA PLTQKRLRKP TRRYIDESSD FSARRSKKRA EVSTSAPESK 1380 NKILKVRCQK KSRAEPMEME LCPEESSCKA IQVPFASLVN EECDKKHACN AIQVLRPHKE 1440 EPPKEVAVVN LKDDAVAPKR LDQDGVRRKH HRLWTVSEVR KLIDGVAQYG VGRWSHIKKL 1500 YFSSSAHRTP VDLKDKWRNL LKATYLQKQS KITEKGKHNL SWRPLPKSVL HRVSELANMH 1560 PYPRNRRCKS SRSPCASSSP EHSNSTNIQ

Sequence ? help Back to Top

Protein Sequence Length: 1589 aa Download sequence Send to blast

MILVLGFSPC VWCAPASNQA LANANPTAVP ILASFIYNQL ANLTKVFHKD ITQALGFCID  60
DVDAELFEAF NFAKNLEFLN NCFKETKDVT QRLCNAAEMK YYFSIFLDAK STKQTEALRP  120
NRNCNLTSWI DGCEPGWSCS VGKNEKLDLK NAKDIPDRTH DEQPCCEGFF CPRGLTCMMP  180
CPLGAYCPRA TLNKTTGVCE PKFPDIHTNY LQERQNTLVE QLIIGVVKQT VGSYSAHQDL  240
TVQLPPKRLF ARKEITVGRA LQHREGALSF ILIIFYNCSD QVINTKYQRV AKSREAAARH  300
ARETAQARQR WGLVKDVAKK RTLGLQQQLS RTFSKKTSVK QGPRGGFNLP KTNDEASAIP  360
PKPPGSSAGK GKKKEPSALT KMMHSIENET DNAEGFHMQI GDKNIKKQAV NAKNLHTRSQ  420
IFKYAYGQLE KEKAMEQKTK NMTFSGVISM ATNENTELKT RPPIEVAFKD LTITLKKKHK  480
HLMRSVTGKL MPGRISAVMG PSGAGKTTFL SAVTGKLTQC TLSGIVLING RTESIHSYKK  540
IIGFVAQDDI VHGDLTVEEN LRFNARCRLA ADLPKADKVL VVERVIESLG LQAVRDSLVG  600
SVEKRGISGG QRKRVNVGME MVMEPSLLIL DEPTSGLDSS SSNLLLKALR REALEGVNIC  660
MVVHQPSYTL YKMFDDLVLL AKGGLVAYHG PVKKVEEYFA NLGITVPDRV NPPDHFIDIL  720
EGMVKPGGGV TVEQLPVRWM LHNGYPVPPD MMQLCDQIAM SSKGVVAAPD QSFSVDWHEK  780
RDSLSHGLLK SHDLSNRITP GINRQYRYYL GRVGKQRLRE AQIQAADYLI LLVAGACLGI  840
LSNQKGDTFG YYGYMYSVIA VSLLCKISAL RSFSLDKLEY WRERESGMSS LAYFLSKDTI  900
DHFNTVIKPL VFLSMFYFLN SPRSSFGANY LVYLCLVYCV TGIAYVFAIC FAAGQAQLWC  960
VLVPVVLTLI ANQEPDGTVG KYIAKFCYPR WALEAFVVAS AQRIFTASSK ISGLLFSLKL  1020
TSFLSIFLLC IFIFLGQNSA FRSGFASLGV WFDETETRDD HASISGVLCF DEKRVLKGME  1080
RKGALYNIGS NIASKRENEI NQQKKKLLSS IFLLEEPVSN CTSGIPYQVF LAFLFFYACE  1140
EVLDLKRSQF EAGKIQTQND LSTPCEDYLL DIEFAESITN LDYDSSRGLL DPILESQIPL  1200
SSCDGADTCG MPYSSGLVVQ EAQSQNAMFG LTNSELHDLS RDKCESQLLV EYNAVKFPTA  1260
FNPGDISNVD DVAGFFAEAA SSEKMNDSMI DHSALTSNRI PFMSNATLIE GQDVNGESFD  1320
LHESSVISPP VTSQAINTDA PLTQKRLRKP TRRYIDESSD FSARRSKKRA EVSTSAPESK  1380
NKILKVRCQK KSRAEPMEME LCPEESSCKA IQVPFASLVN EECDKKHACN AIQVLRPHKE  1440
EPPKEVAVVN LKDDAVAPKR LDQDGVRRKH HRLWTVSEVR KLIDGVAQYG VGRWSHIKKL  1500
YFSSSAHRTP VDLKDKWRNL LKATYLQKQS KITEKGKHNL SWRPLPKSVL HRVSELANMH  1560
PYPRNRRCKS SRSPCASSSP EHSNSTNIQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6eti_A	2e-58	476	996	57	581	ATP-binding cassette sub-family G member 2
6eti_B	2e-58	476	996	57	581	ATP-binding cassette sub-family G member 2
6feq_A	2e-58	476	996	57	581	ATP-binding cassette sub-family G member 2
6feq_B	2e-58	476	996	57	581	ATP-binding cassette sub-family G member 2
6hij_A	2e-58	476	996	57	581	ATP-binding cassette sub-family G member 2
6hij_B	2e-58	476	996	57	581	ATP-binding cassette sub-family G member 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006354343.1	0.0	PREDICTED: putative white-brown complex homolog protein 30
Swissprot	Q9SJK6	0.0	WBC30_ARATH; Putative white-brown complex homolog protein 30
TrEMBL	A0A3Q7HWM8	0.0	A0A3Q7HWM8_SOLLC; Uncharacterized protein
STRING	Solyc09g008000.2.1	0.0	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	2e-24	TRF-like 6

Publications ? help Back to Top
Sánchez-Fernández R,Davies TG,Coleman JO,Rea PA The Arabidopsis thaliana ABC protein superfamily, a complete inventory. J. Biol. Chem., 2001. 276(32): p. 30231-44 [PMID:11346655] Garcia O,Bouige P,Forestier C,Dassa E Inventory and comparative analysis of rice and Arabidopsis ATP-binding cassette (ABC) systems. J. Mol. Biol., 2004. 343(1): p. 249-65 [PMID:15381434] Bock KW, et al. Integrating membrane transport with male gametophyte development and function through transcriptomics. Plant Physiol., 2006. 140(4): p. 1151-68 [PMID:16607029] Sugiyama A, et al. Genome-wide analysis of ATP-binding cassette (ABC) proteins in a model legume plant, Lotus japonicus: comparison with Arabidopsis ABC protein family. DNA Res., 2006. 13(5): p. 205-28 [PMID:17164256] Verrier PJ, et al. Plant ABC proteins--a unified nomenclature and updated inventory. Trends Plant Sci., 2008. 13(4): p. 151-9 [PMID:18299247]