PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00432.1_g00011.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 514aa    MW: 58236.8 Da    PI: 9.8301
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00432.1_g00011.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.85.8e-28959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             kri+n++ rqvtfskRrng+lKKA+EL +LCda+v +iifsstgklye++s
  Sme2.5_00432.1_g00011.1  9 KRIDNTTSRQVTFSKRRNGLLKKAKELAILCDAQVGLIIFSSTGKLYEFAS 59
                             79***********************************************86 PP
2K-box63.48.8e-222943871598
                    K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK..........nellleqieelqkkekelqee 90 
                              + +q+e+a L+++++ Lq+++R+llGe+L+ Ls k+L +Le+q+e slk iR++K          +++l+++i+el +k + +++e
  Sme2.5_00432.1_g00011.1 294 AFWQREVASLRQQLHYLQENHRQLLGEELSGLSAKDLTNLENQIEMSLKGIRKQKdpdcitlflqEQILTDEIRELNQKGNLIHQE 379
                              68****************************************************9444444444469******************* PP

                    K-box  91 nkaLrkkl 98 
                              n +L kk+
  Sme2.5_00432.1_g00011.1 380 NIELYKKV 387
                              ****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.029161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-32278IPR002100Transcription factor, MADS-box
CDDcd002651.67E-43274No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-28323IPR002100Transcription factor, MADS-box
PfamPF003198.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.979293393IPR002487Transcription factor, K-box
PfamPF014862.9E-24294387IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MGRGKIVIKR IDNTTSRQVT FSKRRNGLLK KAKELAILCD AQVGLIIFSS TGKLYEFAST  60
SMRSTIDRYN KAKEENNHLM NPMSEVKQAQ SKVILGPNYS CIMLSASFHS FNLDFTHLYH  120
GSQQSSRKSQ AHRIHPHQIF YLTQFIVLPL MSTAKNGGET PPNTCATLLW ELHVLIDSLS  180
LLLPYSCSHT ASHVSLLPPV ALLSSGHHHQ SQLQMPADGT SVVSTNYTSE VPTLIKQMHT  240
GKLILVLKIP RKETDDRFLT DETCGIVNGK LQRSCKNAPW KFERLAIDGF KRVAFWQREV  300
ASLRQQLHYL QENHRQLLGE ELSGLSAKDL TNLENQIEMS LKGIRKQKDP DCITLFLQEQ  360
ILTDEIRELN QKGNLIHQEN IELYKKVNII QQEYTELQKI SEKGCGSEPN GGVQATHTIS  420
NGYGLHAPIN LQLTQPQTQK NGTSTSAMQL GRQKRKRDTN STFTFKTGYN CTTQKTDTSL  480
FPQLDLHLKD ISVNPILDQA RRKKFIKPEK IMLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18174174MEF2C
5f28_B1e-18174174MEF2C
5f28_C1e-18174174MEF2C
5f28_D1e-18174174MEF2C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2392381e-52AC239238.8 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-156i17 map 1, complete sequence.
GenBankAC2408551e-52AC240855.7 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-100k15 map 1, complete sequence.
GenBankHG9754401e-52HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-52HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769750.11e-87MADS-box transcription factor 23
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-43AGAMOUS-like 21