PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00441.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 118aa MW: 13460.5 Da PI: 9.9135

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00441.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00065	44	66	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+ k + ++H +++ Sme2.5_00441.1_g00001.1 44 FACRKCGKCLAVKGDWRTHEKNC 66 78*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MLGIPCYCCE EGCKNNINHP RAKPLKDFRT LQTHYKRKHG TKRFACRKCG KCLAVKGDWR 60 THEKNCGKRW LCVCGSDFKH KRSLKDHIAS FGEGHAPSPP TNNSFEGVEV HRAGNFFV

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975516	1e-118	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016570849.1	4e-80	PREDICTED: protein TRANSPARENT TESTA 1-like
Swissprot	Q8VWG3	2e-57	TT1_ARATH; Protein TRANSPARENT TESTA 1
Swissprot	Q9SGD1	5e-57	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	A0A1U8GRW7	1e-78	A0A1U8GRW7_CAPAN; protein TRANSPARENT TESTA 1-like
TrEMBL	A0A2G2WZN3	8e-79	A0A2G2WZN3_CAPBA; Protein TRANSPARENT TESTA 1
TrEMBL	A0A2G2ZQG0	5e-79	A0A2G2ZQG0_CAPAN; Zinc finger protein WIP3
TrEMBL	A0A2G3CNX8	1e-78	A0A2G3CNX8_CAPCH; Protein TRANSPARENT TESTA 1
STRING	Solyc04g074320.1.1	7e-75	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	9e-60	C2H2 family protein

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908] Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]