PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00444.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 280aa    MW: 31684.3 Da    PI: 8.2155
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00444.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00082160182123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C++C k+ +++  L +H  +H
  Sme2.5_00444.1_g00006.1 160 YQCGICFKMLKTSQALGSHKTVH 182
                              9******************9887 PP
2zf-C2H210.80.0016209231123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp Cgk F +   L  H r+H
  Sme2.5_00444.1_g00006.1 209 HECPFCGKFFQSGQALGGHKRLH 231
                              79*********999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.11E-5733No hitNo description
PROSITE profilePS5015710.138936IPR007087Zinc finger, C2H2
PfamPF139125.3E-9932IPR007087Zinc finger, C2H2
SMARTSM003550.04931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS501578.6160187IPR007087Zinc finger, C2H2
SMARTSM003552.2160182IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.16E-8160231No hitNo description
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-4206231IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.242209231IPR007087Zinc finger, C2H2
PfamPF139128.0E-9209231IPR007087Zinc finger, C2H2
SMARTSM003550.069209231IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280211231IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MIFMSMEKHK CKLCSKKFLS GKALGGHMRS HLIPLPLPPK TPPLNQDSGG CTESTISLCS  60
SENQEDKMME QKDFYYGLRE NPKKSSRMID PEFLESESES ERNTSRRSKR SRGIVENVEQ  120
INKDNKVSDF GLYSDDADIA MCLMMLSRDV WGNSRLKPKY QCGICFKMLK TSQALGSHKT  180
VHKKNHNISD EEEAQQRKVK LINVVEKLHE CPFCGKFFQS GQALGGHKRL HLVIMSSSTS  240
TTTASCSSTN LPNRFIDLNM PPPLEDNEFC QPVEIQQEVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755204e-85HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355440.11e-115PREDICTED: zinc finger protein ZAT1
TrEMBLA0A0V0HJ381e-117A0A0V0HJ38_SOLCH; Putative zinc finger protein ZAT1-like
STRINGPGSC0003DMT4000121541e-115(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-31C2H2-like zinc finger protein