PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00495.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 148aa    MW: 15742.7 Da    PI: 7.191
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00495.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.5e-1863108147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +g+W++eEd +l ++v  +G ++W++Iar ++ gR++k+c++rw + 
  Sme2.5_00495.1_g00008.1  63 KGPWSPEEDAILSRLVSNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 108
                              79******************************.***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.15158113IPR017930Myb domain
SMARTSM007177.1E-1562111IPR001005SANT/Myb domain
PfamPF002492.0E-1763108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2364119IPR009057Homeodomain-like
SuperFamilySSF466892.09E-1764119IPR009057Homeodomain-like
CDDcd001672.60E-1565107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MGNDSLEVQE VTVAVDGFYG GGIGEAGGAG GGGGGGEEEE VLMLEDGSGS SDQVRKKATD  60
RVKGPWSPEE DAILSRLVSN FGARNWSLIA RGIPGRSGKS CRLRWCNQLD PAVKRKPFTG  120
NFRKPSVRPF GEKGFYGNLV SICDLILH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-1660119463B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-141HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363093.13e-58PREDICTED: transcription factor MYB122
TrEMBLM1BTB97e-57M1BTB9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000523951e-57(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1683345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.15e-30myb domain protein 109