PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00499.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 248aa    MW: 27303.4 Da    PI: 6.1509
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00499.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001195117123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C+ C + F ++  L  H++ H
  Sme2.5_00499.1_g00001.1  95 FSCNFCQRKFYSSQALGGHQNAH 117
                              89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.74E-693122No hitNo description
PROSITE profilePS5015711.2495122IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MQTPRFNLEV EALFEDDSDI TSQVASNICV DETFADPSKN RVIDFTLLSS EPVSLDLSLS  60
QDSIGGFSVS STSESSNELA TTQTSVSGPG FQRVFSCNFC QRKFYSSQAL GGHQNAHKRE  120
RTLAKRAMRM GVFSERYANL ASLHLHGSTI RSLGIKAHAS LHQMSAPTIR PLDFQTSARF  180
EYGNRQSPPL YMGNDDADQL VLWPGSFRQV TNPGTSHTNF ALAGCSNVTL TPYVEKDEPI  240
TPDLTLRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352391.11e-165PREDICTED: zinc finger protein 4-like
TrEMBLM1B1401e-164M1B140_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000346891e-165(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12832347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.12e-36zinc finger protein 4