PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00536.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 153aa    MW: 16922 Da    PI: 6.7449
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00536.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.31.3e-43101091100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv kll+++ +e+reda+s+l+yeAear+rdPvyG+v+ i+ lq+q
  Sme2.5_00536.1_g00002.1  10 PCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVNKLLNEVLPEQREDAVSTLAYEAEARVRDPVYGCVSAITFLQRQ 95 
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              +e+l++el+++k+ 
  Sme2.5_00536.1_g00002.1  96 VERLEKELDAAKAD 109
                              ********999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.0979110IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-4210107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MASSSCYNSP CAACKFLRRK CLPGCIFAPY FPPEEPQKFA NVHKIFGASN VNKLLNEVLP  60
EQREDAVSTL AYEAEARVRD PVYGCVSAIT FLQRQVERLE KELDAAKADL MRYTQQETRM  120
GYDHHGGGGG GGYFPYYPSS WNDQNPSGGG GNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-62911310114LOB family transfactor Ramosa2.1
5ly0_B4e-62911310114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549822.11e-88PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
SwissprotQ9FML43e-66LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A2G2V6F32e-90A0A2G2V6F3_CAPBA; LOB domain-containing protein 6
STRINGSolyc06g071660.1.18e-82(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.46e-69LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  2. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]