PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00538.1_g00005.1

Common Name

MYB, MYB2

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

MYB_related

Protein Properties

Length: 221aa MW: 25302.3 Da PI: 5.4015

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00538.1_g00005.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.5	2e-10	14	54	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd+ll ++ + W++Ia +++ Rt++++k++w+++ Sme2.5_00538.1_g00005.1 14 KGAWTEEEDLLLRKCM----DK-WSLIAGRFP-ERTANDVKNYWNTH 54 79*******98774....46.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.97E-12	9	61	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.393	9	59	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-15	11	59	IPR009057	Homeodomain-like
SMART	SM00717	9.5E-8	13	57	IPR001005	SANT/Myb domain
Pfam	PF00249	6.7E-9	14	54	IPR001005	SANT/Myb domain
CDD	cd00167	1.10E-8	16	55	No hit	No description
SuperFamily	SSF101447	4.18E-5	91	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MNTATVAKSL GVRKGAWTEE EDLLLRKCMD KWSLIAGRFP ERTANDVKNY WNTHIQKKLT 60 NSRPQMQERK HNNALKITKN TILRPQPRPP PPPPPPPPPP PRTFSSAKNV SWCTNKNMNI 120 TNTLDKDNER HKEIGVNTCE KPKGDATSSS IDDDGVQWWT SLLENCNEIE EEATAVLSFE 180 EENKFLPNLL HEENNSPPMQ QGQNDGWDDF SVDIDLWNLF N

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC525885	0.0	KC525885.1 Solanum melongena strain YZ14 MYB transcription factor (MYB) mRNA, complete cds.
GenBank	KF727477	0.0	KF727477.1 Solanum melongena cultivar Zi Chang anthocyanin R2R3-MYB transcription factor (MYB2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001311547.1	1e-75	transcription factor MYB113-like
TrEMBL	M9ZVF9	1e-122	M9ZVF9_SOLME; Anthocyanin R2R3-MYB transcription factor
STRING	Solyc10g086290.1.1	1e-74	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-13	myb domain protein 4

Publications ? help Back to Top
Zhang Y, et al. Anthocyanin accumulation and molecular analysis of anthocyanin biosynthesis-associated genes in eggplant (Solanum melongena L.). J. Agric. Food Chem., 2014. 62(13): p. 2906-12 [PMID:24654563]