PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00539.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

FAR1

Protein Properties

Length: 1077aa MW: 122080 Da PI: 9.1954

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00539.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.8	1e-19	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle 82 +fY e+Ak +GFs+r+++++ + + t+r fvC + g++ + +++k +r+r+++r+gC+a ++++k+ +w+vt + Sme2.5_00539.1_g00001.1 62 EFYAEFAKGCGFSIRRHRTEGKaGVGKGLTRRYFVCHRAGNTPVKAANDHKPQRNRKSSRCGCQAYMRISKTAdlgVPEWRVTGFM 147 6*************99887745667799************999******************99777789*** PP FAR1 83 leHnHela 90 ++HnHel Sme2.5_00539.1_g00001.1 148 NHHNHELL 155 ****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-16	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-19	278	368	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.705	556	589	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.1E-7	559	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.2E-6	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1077 aa Download sequence Send to blast
MSEEAGQMMG LYGDPSDQRS LSLDDTSSTE DSPDQTRLSL ETSKEAVPYI GQRFPNHDAA 60 YEFYAEFAKG CGFSIRRHRT EGKAGVGKGL TRRYFVCHRA GNTPVKAAND HKPQRNRKSS 120 RCGCQAYMRI SKTADLGVPE WRVTGFMNHH NHELLEPNQV RFLPAYRSIS DADKGRILMF 180 AKTGISVQQM LRLMELEKGV EPGYLPFTEK DVRNLLQSFR KVDPEDESVD LLRMCRNIKE 240 KDPNFKYDFS LDSNNRLENI AWSYASSIQS YDIFGDAVVF DTTHRLAAFD MPLGIWVGVN 300 NYGMPCFFGC VLLREETLRS YSWALKAFLA FMNGKAPQTV LTDQNMCLKE AINLEMRTTK 360 HALCIWLVVA KFPSWFNAVL GERYNEWKTE FNRLYNLESV DDFELGWRDM VNSFGLHTNR 420 HIASLFALRS MWALPYLRSH FFAGMTTTGH SKSINAFIQR FLSAQTRLAH FVEQVAVTVD 480 FKDQTGEQQT MQQNLQNICL KTGAPMEARA ASVLTPFAFS KLQEQLVLAA HYASFQMEDG 540 FLVRHHTKLE GGRKVYWVPR EGIISCSCHQ FEFSGILCRH ALRVLSTGNC FQIPERYLPY 600 RWRRISTPAT KALQSTHSDH TERVQLLQSM VSTLITESAK SRERLDIAIE NVSILLSRIR 660 EQPICSQVLR LRGVESVISR RKSEGSCGRG VSGVITIILV SILVLAGLCC ILYLIYFHTK 720 IRGQGYSQLG YFHGPWIIRI TFILFAIWWG FGEVVRLNLI RGDRRLLSAL SFRWQETVCK 780 CYIVSSLGFA EPCLYLTVVF LLRASLQKSG TLSQKWNGKT IGYILLFCLP VFALQLMLIL 840 AGPEYRKNHM KHLPHYFTTP VALHENDVAL CTYPLLSTFC LGLFAILLTS YLFWVGGRIL 900 HLVINRSLQK RVYMLVVSIS VFFPIRILLL GLTVRTQPEH FPFQALAFLG FVSFFFCIGM 960 GVFILVIMPM RDCLALKKSS ERDIEARRRL SDEQNDTVSL IANQSTLGGS MVSSPGRNSA 1020 ASTKRGSISF RTDKDATSGV AFVELSVFSP SQHSTPPGSP QLLGWPMLPP SQAQGPL

Sequence ? help Back to Top

Protein Sequence Length: 1077 aa Download sequence Send to blast

MSEEAGQMMG LYGDPSDQRS LSLDDTSSTE DSPDQTRLSL ETSKEAVPYI GQRFPNHDAA  60
YEFYAEFAKG CGFSIRRHRT EGKAGVGKGL TRRYFVCHRA GNTPVKAAND HKPQRNRKSS  120
RCGCQAYMRI SKTADLGVPE WRVTGFMNHH NHELLEPNQV RFLPAYRSIS DADKGRILMF  180
AKTGISVQQM LRLMELEKGV EPGYLPFTEK DVRNLLQSFR KVDPEDESVD LLRMCRNIKE  240
KDPNFKYDFS LDSNNRLENI AWSYASSIQS YDIFGDAVVF DTTHRLAAFD MPLGIWVGVN  300
NYGMPCFFGC VLLREETLRS YSWALKAFLA FMNGKAPQTV LTDQNMCLKE AINLEMRTTK  360
HALCIWLVVA KFPSWFNAVL GERYNEWKTE FNRLYNLESV DDFELGWRDM VNSFGLHTNR  420
HIASLFALRS MWALPYLRSH FFAGMTTTGH SKSINAFIQR FLSAQTRLAH FVEQVAVTVD  480
FKDQTGEQQT MQQNLQNICL KTGAPMEARA ASVLTPFAFS KLQEQLVLAA HYASFQMEDG  540
FLVRHHTKLE GGRKVYWVPR EGIISCSCHQ FEFSGILCRH ALRVLSTGNC FQIPERYLPY  600
RWRRISTPAT KALQSTHSDH TERVQLLQSM VSTLITESAK SRERLDIAIE NVSILLSRIR  660
EQPICSQVLR LRGVESVISR RKSEGSCGRG VSGVITIILV SILVLAGLCC ILYLIYFHTK  720
IRGQGYSQLG YFHGPWIIRI TFILFAIWWG FGEVVRLNLI RGDRRLLSAL SFRWQETVCK  780
CYIVSSLGFA EPCLYLTVVF LLRASLQKSG TLSQKWNGKT IGYILLFCLP VFALQLMLIL  840
AGPEYRKNHM KHLPHYFTTP VALHENDVAL CTYPLLSTFC LGLFAILLTS YLFWVGGRIL  900
HLVINRSLQK RVYMLVVSIS VFFPIRILLL GLTVRTQPEH FPFQALAFLG FVSFFFCIGM  960
GVFILVIMPM RDCLALKKSS ERDIEARRRL SDEQNDTVSL IANQSTLGGS MVSSPGRNSA  1020
ASTKRGSISF RTDKDATSGV AFVELSVFSP SQHSTPPGSP QLLGWPMLPP SQAQGPL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006349293.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X1
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A3Q7EPN6	0.0	A0A3Q7EPN6_SOLLC; Uncharacterized protein
STRING	XP_009765793.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10896	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]