PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00557.1_g00010.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YC
Protein Properties Length: 261aa    MW: 29409.6 Da    PI: 6.1392
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00557.1_g00010.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1406.1e-441402337100
                    NF-YC   7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                              ++++e++tdfkn+elP++rikki+k+d+dv+m+s+e+P+ll+kacelfi +lt rswlhae+n+rrtlkk+d+++a+ +tdifdfl
  Sme2.5_00557.1_g00010.1 140 QQEMEQVTDFKNNELPITRIKKIIKSDKDVRMVSTESPILLAKACELFIQDLTRRSWLHAEKNQRRTLKKTDVTTAIMETDIFDFL 225
                              456*********************************************************************************** PP

                    NF-YC  93 vdivprde 100
                              +divp d+
  Sme2.5_00557.1_g00010.1 226 LDIVPGDD 233
                              *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.27E-26139225IPR009072Histone-fold
PfamPF008081.9E-19153216IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.0E-31154230IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MMLLLLMAPC QLSVVPFYAA GGSNGQDNLD CQRTKLRFKC VSGILVIVWG NSGDIDDDVT  60
HRIGAAWTKW RLACGVLCDK KIANQKCTCP EDACCRDEDV KMDVWSHQER QGQSAENPTR  120
AQHLLEKKEE QWKMLLASQQ QEMEQVTDFK NNELPITRIK KIIKSDKDVR MVSTESPILL  180
AKACELFIQD LTRRSWLHAE KNQRRTLKKT DVTTAIMETD IFDFLLDIVP GDDATGGSTP  240
SFLPFYAAGG SSGPDNLDRQ R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-37138230294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022736089.12e-48nuclear transcription factor Y subunit C-1-like
TrEMBLM1B8B72e-46M1B8B7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000394713e-47(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.12e-45nuclear factor Y, subunit C1