PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00574.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 171aa    MW: 19669.8 Da    PI: 5.32
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00574.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.59.8e-3299157159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYG+K+vk+s++pr+YYrC+++gCpvkk+ver++ed ++v++tYeg Hnh+
  Sme2.5_00574.1_g00007.1  99 LDDGYKWRKYGKKMVKNSPNPRNYYRCSMEGCPVKKRVERDKEDSRYVITTYEGVHNHP 157
                              59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-3485157IPR003657WRKY domain
SuperFamilySSF1182906.8E-2991158IPR003657WRKY domain
PROSITE profilePS5081130.6394159IPR003657WRKY domain
SMARTSM007741.1E-3699158IPR003657WRKY domain
PfamPF031062.8E-25100157IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MAANNPSASM FDGGFTPILD SPDSDDFSNN LINFELSDIF EIDNWPLQQD PTLIPHYSNY  60
AANQVVNHGE PSNNIGSSSD KKEVKDKVAF RTLSQIEILD DGYKWRKYGK KMVKNSPNPR  120
NYYRCSMEGC PVKKRVERDK EDSRYVITTY EGVHNHPRFD EEEISSKLLR L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-2589156774Probable WRKY transcription factor 4
2ayd_A4e-2587156271WRKY transcription factor 1
2lex_A5e-2589156774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1911671e-127DQ191167.1 Capsicum frutescens putative WRKY transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351605.21e-101PREDICTED: probable WRKY transcription factor 51
TrEMBLA0A3Q7HPW54e-98A0A3Q7HPW5_SOLLC; Uncharacterized protein
STRINGSolyc08g062490.2.16e-99(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-38WRKY DNA-binding protein 50