PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00581.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 418aa    MW: 47565.3 Da    PI: 5.1787
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00581.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.3e-0689112226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              k  lC f+ + G+C  G +CkF+H+
  Sme2.5_00581.1_g00004.1  89 KSILCEFYKA-GQCAKGFKCKFSHD 112
                              6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-487113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-687112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.06587114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-489113IPR000571Zinc finger, CCCH-type
SMARTSM003560.91160196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.573160197IPR000571Zinc finger, CCCH-type
PfamPF165437.5E-17217296IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MPPKQSKADV AKKQKIVEDK TFGLKNKNKS KNVQKYVQSL QQNVAPKPDP KKIDAKKKKE  60
EEKAREKELN ELFKVAISQP KVPLGVDPKS ILCEFYKAGQ CAKGFKCKFS HDLNVQRKGE  120
KIDIFSDKRD EDGKETMDDW DQETLEKVVA SKSKEYNKNK PTDIVCKYFL DAVEKKQYGW  180
FWACPNGKEC HYRHALPPGY ILKSQMKALL QEEADKMPIE EEIDEQRAKL TASTPLTTEL  240
FMEWKKKKIE EREANLAKQR ADRAKDDRMS GRELFMSDAS WFVDDVGAYD KYDREEQSAE  300
PSKWFGLGDS MLEVSNLKPL ASESKGFCLL GRARCTGLAS AGYLSYVENK DSAREEASSS  360
TSAQKNIHDG GETSHNDQVD DNYDDDDDDD DFDVDELNEL EASLSKTSLQ INEPGSRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1805741e-83EU180574.1 Solanum lycopersicum clone BAC C09HBa0179M08, complete sequence.
GenBankHG9755211e-83HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246704.10.0zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ21e-162C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A3Q7HY180.0A0A3Q7HY18_SOLLC; Uncharacterized protein
STRINGSolyc09g007230.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA568078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-150C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]