PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00594.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 388aa    MW: 43450 Da    PI: 10.0077
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00594.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.4e-16117207199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              f+k++++s+v +  +l lp kf+ +h   +e+++ + l de+g ++e  +   +k+ +  l++GW+ F+ +++L++gD +vF+l++
  Sme2.5_00594.1_g00002.1 117 FIKTMVRSHVYSCFWLGLPSKFCLDHL--PESTVNVLLVDEEGLEYEALF--IGKRTG--LSGGWRAFALDHKLDDGDALVFELVE 196
                              89*********************9995..467899***************..555544..***********************987 PP

                              SSEE..EEEEE-S CS
                       B3  87 rsefelvvkvfrk 99 
                               ++f  +v ++r+
  Sme2.5_00594.1_g00002.1 197 PTKF--KVYIVRA 207
                              6666..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-21109210IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.75E-24110210IPR015300DNA-binding pseudobarrel domain
CDDcd100172.41E-25115206No hitNo description
PfamPF023621.3E-14117207IPR003340B3 DNA binding domain
PROSITE profilePS5086312.971117208IPR003340B3 DNA binding domain
SMARTSM010193.3E-23117208IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDLGILNISK NLSDLTKSEK KSGYKTELHR VRQKANDVYL SEPRRSARAR NPVPTYRDEI  60
DIELPSLRRR SKFNSSWASY LARPLEEVKV ASYEEKVQAL KCAEKLQSNL QSENPFFIKT  120
MVRSHVYSCF WLGLPSKFCL DHLPESTVNV LLVDEEGLEY EALFIGKRTG LSGGWRAFAL  180
DHKLDDGDAL VFELVEPTKF KVYIVRASQC SSGVDKSGAE NEEREAEETS KSVTKKTKKR  240
SNKSEAPAVA KEESEAEETS KSVTKKTKKR SNKSEAPAVA KEESEAEETS KSVTKKTKKR  300
SNKSEAPAVA KEESEAEETS KSVTKKTKKR SNKSEAPAVA KEESEAEETS KSVTKKRKKS  360
SNKSEVPAIA KEEVPAMAVA TRRSTRRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354358KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139570.0BT013957.1 Lycopersicon esculentum clone 132981R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344089.11e-167PREDICTED: putative B3 domain-containing protein At5g58280
TrEMBLM1BUK61e-165M1BUK6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000531991e-166(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125102022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.14e-71B3 family protein