PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00601.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 279aa    MW: 31923.1 Da    PI: 4.6502
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00601.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3573.6e-1879169187
                              EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                              f+k+l +sdv++++r+v+pkk ae++    +   +e++ +t+ d +g  +W+++++y  +++s++yvl+ ++ +Fv+ ++L++gD 
  Sme2.5_00601.1_g00006.1  79 FDKQLQNSDVSSLRRIVVPKKAAERYlpalE--IKEGFPITMDDMDGiHVWSFRYRYwpNNSSRMYVLE-NTGDFVQTHELRQGDY 161
                              89**************************544..557788********9*********888899999999.**************** PP

                              EEEEE-SS CS
                       B3  80 vvFkldgr 87 
                              + ++++++
  Sme2.5_00601.1_g00006.1 162 FALHYNDQ 169
                              **998754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.54E-2077173IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-2177166No hitNo description
Gene3DG3DSA:2.40.330.106.3E-2477172IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-1379181IPR003340B3 DNA binding domain
PROSITE profilePS508639.1579181IPR003340B3 DNA binding domain
PfamPF023621.4E-1579169IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MMAMMEITEA YGVMADGNDN KMSPIPPLKR SRSQRRRRSS LNFASLEFPS LLSHVPPPPP  60
PPPLPAARVL EPTGFRFLFD KQLQNSDVSS LRRIVVPKKA AERYLPALEI KEGFPITMDD  120
MDGIHVWSFR YRYWPNNSSR MYVLENTGDF VQTHELRQGD YFALHYNDQK QIYGIEARKA  180
GSGTVFRGYE AEDVILTEYA QAADDRNGAL MKEPEMDMSS FYFPAMDNEM GMSFIYDTSF  240
WNEPAFDFVG GPMTYYSTNV CPMPSFGSIE DSFAVDDFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A3e-46761812107B3 domain-containing transcription factor FUS3
6j9b_D3e-46761812107B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755141e-139HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231748.21e-162B3 domain-containing transcription factor FUS3
TrEMBLA0A3Q7FCD91e-160A0A3Q7FCD9_SOLLC; Uncharacterized protein
STRINGSolyc02g094460.1.11e-161(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80452125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.12e-53B3 family protein