PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00622.1_g00024.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

G2-like

Protein Properties

Length: 364aa MW: 41012.4 Da PI: 9.3962

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00622.1_g00024.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.2	6.5e-32	208	262	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH+rFve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR Sme2.5_00622.1_g00024.1 208 KTRIRWTQDLHDRFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRN 262 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.614	205	265	IPR017930	Myb domain
SuperFamily	SSF46689	8.6E-17	206	262	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-28	206	263	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.5E-24	208	263	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-8	212	261	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MGFCFQPENS AQNGCQQQQQ QQQNIWPSTD SSSSRTIISR IGSSPSAFFA TERYLGLTQY 60 EYQDNNSCTQ LSKNLDPQNP SFTQQCGNGF LENSSARVDT DFPKISMPSF IRSQFSNSQP 120 LGSEGLYENP YSNLSEKERI LLLKSKLFRE IDSSNRQPAS VPFQRNQDSG VSNNTSGFNL 180 VHIKQQSGSQ SATSFNNSSC SGGPLSSKTR IRWTQDLHDR FVECVNRLGG ADKATPKAIL 240 KLMDSEGLTI FHVKSHLQKY RNAKFIPEST EGRSGKTDSP NNVTQMILKI RRLLSNVEMV 300 SWKIHQHELT PIFPRFDRQQ NWNANQRSTA YATRSPEAPS RATRDSAKVT TEDRRTRGAI 360 EEDI

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MGFCFQPENS AQNGCQQQQQ QQQNIWPSTD SSSSRTIISR IGSSPSAFFA TERYLGLTQY  60
EYQDNNSCTQ LSKNLDPQNP SFTQQCGNGF LENSSARVDT DFPKISMPSF IRSQFSNSQP  120
LGSEGLYENP YSNLSEKERI LLLKSKLFRE IDSSNRQPAS VPFQRNQDSG VSNNTSGFNL  180
VHIKQQSGSQ SATSFNNSSC SGGPLSSKTR IRWTQDLHDR FVECVNRLGG ADKATPKAIL  240
KLMDSEGLTI FHVKSHLQKY RNAKFIPEST EGRSGKTDSP NNVTQMILKI RRLLSNVEMV  300
SWKIHQHELT PIFPRFDRQQ NWNANQRSTA YATRSPEAPS RATRDSAKVT TEDRRTRGAI  360
EEDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-22	208	265	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-22	208	265	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-22	208	265	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-22	208	265	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249167.1	1e-168	myb family transcription factor PHL5-like
Refseq	XP_015089588.1	1e-168	myb family transcription factor PHL5
TrEMBL	A0A3Q7IKJ3	1e-167	A0A3Q7IKJ3_SOLLC; Uncharacterized protein
STRING	Solyc10g078720.1.1	1e-168	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2491	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.2	8e-37	G2-like family protein