PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00632.1_g00020.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 148aa    MW: 16066.9 Da    PI: 10.6106
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00632.1_g00020.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.21.4e-202155135
                     GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                             Cs C+ttkTplWR+gp+g+k+LCnaCG++yrkk++
  Sme2.5_00632.1_g00020.1 21 CSDCKTTKTPLWRSGPSGPKSLCNACGIKYRKKKS 55
                             ********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.0E-171565IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.3E-171869IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.23E-141877No hitNo description
PROSITE profilePS5011412.8091951IPR000679Zinc finger, GATA-type
CDDcd002022.06E-142070No hitNo description
PROSITE patternPS0034402146IPR000679Zinc finger, GATA-type
PfamPF003202.1E-182154IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDPTQKEESS GGETTGITKS CSDCKTTKTP LWRSGPSGPK SLCNACGIKY RKKKSTPIGL  60
SKGLTKKKEK LVSDSDEVAY CEKGNIGNGK DGKLSKVLRV KLMMLGKEVV ILQRQRSSMK  120
KPRNKRKLGE VERAAVLLMA LSCGSVFA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2385031e-62AC238503.9 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-10f3 map 1, complete sequence.
GenBankAC2389201e-62AC238920.12 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-222e21 map 1, complete sequence.
GenBankHG9755131e-62HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344726.12e-88PREDICTED: GATA transcription factor 17
TrEMBLA0A0V0HCG45e-87A0A0V0HCG4_SOLCH; Putative GATA transcription factor 17-like
TrEMBLM1CB785e-87M1CB78_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000637718e-88(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127501721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.19e-23GATA transcription factor 15