PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00669.1_g00010.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Nin-like
Protein Properties Length: 243aa    MW: 28029.2 Da    PI: 7.8035
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00669.1_g00010.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK76.23.9e-2482130452
                   RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                              ++s + +skyF+ pi+ AAkeL+++lT+LK++CR +GI+RWPhRk+ sl
  Sme2.5_00669.1_g00010.1  82 TLSRDAVSKYFYVPITRAAKELNIGLTLLKKRCRDLGIRRWPHRKLMSL 130
                              688899****************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.14364151IPR003035RWP-RK domain
PfamPF020424.3E-2083130IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MFAMGAGELC YEEIGKEVKM WNEMSSEFGL SSNLIGNGNQ QLLLCDNVNI MTNDRVKENI  60
ITEKEKDDSR QIREEINSSR VTLSRDAVSK YFYVPITRAA KELNIGLTLL KKRCRDLGIR  120
RWPHRKLMSL QTLIKNVKEL EKGGGHGMEQ KLKDVINMLE KEKKKMEEIP DLELEEKTKR  180
LRQACFKANY KRRRLMCMQE LQATFGSYCS NTPAHDNLIG EDDEEINSLL ADSFSYNSPT  240
LHA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190194KRRRL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754424e-57HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027771446.11e-125protein RKD2-like
SwissprotQ9M9U95e-52RKD1_ARATH; Protein RKD1
TrEMBLA0A2G2WQY41e-110A0A2G2WQY4_CAPBA; Protein RKD3
STRINGSolyc03g116010.1.11e-115(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42742142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.13e-49RWP-RK domain-containing protein