PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00678.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 388aa    MW: 42882.9 Da    PI: 7.8763
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00678.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.44.8e-11189239555
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                              kr++r   NR +A rs +RK  ++ eLe+kv++L++e ++L  ++  l+ +
  Sme2.5_00678.1_g00005.1 189 KRAKRILANRQSAARSKERKIRYTNELERKVQTLQTEATTLSAQITVLQSM 239
                              9*****************************************999877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-9185249IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.002187237IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-10189238No hitNo description
PfamPF001708.9E-10189238IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.13E-11189239No hitNo description
CDDcd147031.53E-21190237No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDPKFAGKPI PVPFLAGRTD LDQMPDTPTR IARHRRAQSE TFFRLPDFDD DILLDDVVAD  60
FNLDISAPSL SPSADTHMQP ANSADSSSNG PGLVAGPGGD HNPRPLNHFR SLSVDADFFD  120
GLEFGEAGAT TPAVSGEEKK MMGSGSVSRH RHSNSMDGSF SSASFEAESS VKKAMPPDRL  180
AELALIDPKR AKRILANRQS AARSKERKIR YTNELERKVQ TLQTEATTLS AQITVLQSMF  240
VGAAAKKQWG ITKLEKGFVG LQEHRCWQWV RELVVHEEER RDNSGLSTEN KELKLRLQAL  300
EQQAHLRDAL NEALREELQR LKIAAGQMSA TNGSRGPRPH FPPQPQSFVQ CGNHHAQQQQ  360
PHIPQSTTST QNIGGQTHPS FMNFNNRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3353431e-179HQ335343.1 Solanum tuberosum repression of shoot growth mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071489.10.0transcription factor VIP1
TrEMBLM0ZJL60.0M0ZJL6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000021000.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25072351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43700.14e-63VIRE2-interacting protein 1