PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00708.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 222aa    MW: 25719.8 Da    PI: 7.8805
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00708.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY25.52.6e-08931391759
                              T-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS
                     WRKY  17 gsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59 
                              g    r YYrCt++   +C ++k+v+  +e+p +  ++tY g+H+++
  Sme2.5_00708.1_g00006.1  93 GCYKRRCYYRCTHKydqDCGATKQVQIIQENPIImYHTTYFGNHTCN 139
                              556679*******99999***********99975168********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-888140IPR003657WRKY domain
SuperFamilySSF1182902.62E-992140IPR003657WRKY domain
SMARTSM007741.5E-792140IPR003657WRKY domain
PfamPF031063.4E-993138IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEDHPHKRVI KQLVEGKRFA IQLQSLLKQD YDKSISADEL IVKIWGSFTQ AISELNTLGN  60
CKTTLAHNQI EEVDKPDRSS SELKKKEKQD RRGCYKRRCY YRCTHKYDQD CGATKQVQII  120
QENPIIMYHT TYFGNHTCNS SKIPKHKHNS QFKPRSDSTV LKEESKGQSD NVSSIVDSNL  180
WQDFMPSSPS AHDSTLAPHK SSYFEMEDYF GKFVDIETIE FS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250|UniProtKB:Q9LY00, ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:21898085}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269|PubMed:21898085}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0621828e-80KM062182.1 Solanum habrochaites cultivar EC520061 WRKY transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068360.11e-100WRKY DNA-binding transcription factor 70
SwissprotK4BIZ94e-95WRK70_SOLLC; WRKY DNA-binding transcription factor 70
TrEMBLA0A089Q8483e-98A0A089Q848_SOLHA; WRKY transcription factor
STRINGPGSC0003DMT4000531221e-96(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61992233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.19e-09WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]