PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00713.1_g00012.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 396aa    MW: 43038.9 Da    PI: 9.0009
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00713.1_g00012.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.7e-20182231255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Sme2.5_00713.1_g00012.1 182 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 231
                              7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.712182239IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-33182240IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22182240IPR016177DNA-binding domain
PfamPF008473.4E-14182231IPR001471AP2/ERF domain
SMARTSM003806.3E-37182245IPR001471AP2/ERF domain
PRINTSPR003671.0E-11183194IPR001471AP2/ERF domain
CDDcd000182.83E-15190241No hitNo description
PRINTSPR003671.0E-11205221IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MYLLKVANSR KSSEYVSFTD TEYTATATTA AAVEGGGGQP YGRSQFFEGG DYSMFTGYSQ  60
TGEMSAMVTA LTHVVSGQKY RPDSSGTGIC YSPSSAYSSS SSGSRAGQKR RSRDQEEFRS  120
GWPYSSVKTE EATSIVEPSN TTISTITTIP AITTTTTITA TSATTTTATG SSEERTGEGR  180
RRYRGVRQRP WGKWAAEIRD PHKAARVWLG TFDTAEAAAR AYDEAALRFR GNRAKLNFPE  240
NVRLLSPQIQ NLTRLTTTTA SPQFIAPVTQ PTPIFHQQQS SDMARDYWEY SQLLQNPGDF  300
FDQQPSTLLE QMFVASSMAL LNSNTLPSSS SSSSSSSSSL ASSTSYPLLY SSYYMPQNNQ  360
IQGTNTSSGT TTNSSNNGSN FSTQFRSTSS QYPPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23181242163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5479791e-147KF547979.1 Solanum melongena cultivar Pusa Uttam ethylene responsive factor 83 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361609.11e-124PREDICTED: ethylene-responsive transcription factor ERF110-like isoform X1
TrEMBLA0A0V0IMG01e-124A0A0V0IMG0_SOLCH; Putative ethylene-responsive transcription factor ABR1-like
STRINGPGSC0003DMT4000484071e-123(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-17ethylene response factor 110