PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00734.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 217aa    MW: 25398.2 Da    PI: 5.0245
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00734.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53e-202171656
                             S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                             +f++eq+e+Le++F+++ ++  +++ eLA+ lgL+ rqV +WFqNrRa++k
  Sme2.5_00734.1_g00007.1 21 RFSDEQVEVLESMFKQKTKLEPNKKLELARDLGLKPRQVAIWFQNRRARWK 71
                             69************************************************9 PP
2HD-ZIP_I/II118.44e-3820106490
              HD-ZIP_I/II   4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                              +r+s+eqv++LE++F++++kLep++K elar+Lgl+prqva+WFqnrRAR+ktkqlE++y++Lk+++d+l+ + e++++e+e+L +
  Sme2.5_00734.1_g00007.1  20 KRFSDEQVEVLESMFKQKTKLEPNKKLELARDLGLKPRQVAIWFQNRRARWKTKQLEHEYRRLKDEFDNLAMKFESMKREKESLLK 105
                              8*******************************************************************************999754 PP

              HD-ZIP_I/II  90 e 90 
                              +
  Sme2.5_00734.1_g00007.1 106 Q 106
                              3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.3621373IPR001356Homeobox domain
SuperFamilySSF466897.52E-191475IPR009057Homeodomain-like
SMARTSM003897.0E-181477IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.9E-212180IPR009057Homeodomain-like
CDDcd000862.43E-152174No hitNo description
PfamPF000461.0E-172171IPR001356Homeobox domain
PRINTSPR000313.9E-64453IPR000047Helix-turn-helix motif
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PRINTSPR000313.9E-65369IPR000047Helix-turn-helix motif
PfamPF021831.3E-973106IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEVIEDSQVE CSKKKSEDGK RFSDEQVEVL ESMFKQKTKL EPNKKLELAR DLGLKPRQVA  60
IWFQNRRARW KTKQLEHEYR RLKDEFDNLA MKFESMKREK ESLLKQELND QLKNNHAGCS  120
RSQDSIDSEI YPNSENVDLK DNIPGCLNTS LDHERSKGAD SNREGTLIEH SRWKKEAEFW  180
NMEELGDSSL GSPEHWDAVG LGDSFDLSCD NSKWWEV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16573RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-115HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755181e-115HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240976.11e-121homeobox-leucine zipper protein ATHB-12
RefseqXP_010322235.11e-121homeobox-leucine zipper protein ATHB-12
TrEMBLA0A3Q7GW491e-119A0A3Q7GW49_SOLLC; Uncharacterized protein
STRINGSolyc06g053220.2.11e-120(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.29e-36homeobox 7