PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00736.1_g00016.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HB-PHD
Protein Properties Length: 769aa    MW: 84698.8 Da    PI: 4.8738
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00736.1_g00016.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox421.6e-13558611356
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              kR t+ +  +++L e F+ n+yp+++++e+L k+lgLt  qV+ WF N R  ++
  Sme2.5_00736.1_g00016.1 558 KRKTYGEVATKRLYESFKDNQYPDRDAKEKLGKELGLTAYQVSKWFENARHCQR 611
                              79999999*****************************************97665 PP
2PHD38.52.7e-13214269151
                              SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                      PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                              +C+ Cg+    ++++++lCdg C++ fH+ C++++l +e++p +   wlC+ C++k
  Sme2.5_00736.1_g00016.1 214 FCAKCGSmdLPADNDIILCDGaCERGFHQLCVDPPLLKEDIPPDdeGWLCPGCDCK 269
                              699****87677********66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579036.2E-14205272IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.108.7E-13211269IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.923212269IPR019787Zinc finger, PHD-finger
SMARTSM002491.6E-9214267IPR001965Zinc finger, PHD-type
PfamPF006287.9E-11214269IPR019787Zinc finger, PHD-finger
CDDcd155049.60E-26214266No hitNo description
PROSITE patternPS013590215266IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.5E-13549607IPR009057Homeodomain-like
PROSITE profilePS5007114.042553613IPR001356Homeobox domain
SuperFamilySSF466892.95E-13554618IPR009057Homeodomain-like
SMARTSM003891.0E-12555617IPR001356Homeobox domain
CDDcd000861.72E-12558607No hitNo description
PfamPF000465.7E-11558611IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MSALGNTAVS SEKVARTAVG AHYTVSAGNM SENPGVEQSG EACENAVQSL NQSECQEKTP  60
GQPRKRKSIS GSPISSSRLL RSKSKEKSET SEPNNTVVTH DATEEKKRKR RKKKHSKHIA  120
GNEFTRIKGH LRYLLHRITY EQTLIEAYSG EGWKGQSLEK IKLEKELQRA KSHIFRYKLK  180
IRDLFQRLDT LLAQGRLPES LFDNEGEIDS EDIFCAKCGS MDLPADNDII LCDGACERGF  240
HQLCVDPPLL KEDIPPDDEG WLCPGCDCKV DCIDLLNDFQ GTNLSVTDSW EKVYPKEAAA  300
AASGDKLDDI SGLPSDDSED DDYNPENPDV EKNDSEDDSN SDESDFYSAS EDLAVVTPKD  360
DAIFGLPSDD SEDDDFNPDD PDKDEPVKTE SSSSDFTSDS EDFSLIFDTN SLQDDEQVVS  420
CSVDNSVPNS ASQEKKAKVG KAKRNSLQDE LSYLMQSGSP LVSAKRHIER LDYKKLHDET  480
YGNESSDSSD EDYEDGPLPK VRKFKDAKGA MASPSSTPTD IKCQSGKQKG SGHTSDSGLS  540
EKLKVGGAGT SESHSSGKRK TYGEVATKRL YESFKDNQYP DRDAKEKLGK ELGLTAYQVS  600
KWFENARHCQ RHSSRWETIM SQKVSKQSPS SPQIIGEPLG TESKSITNDA SCNGVEKLEP  660
PKQYLNGEKS PAIDKNEEDL LIQETSGKKS SKPTAKVDMT SEGSDDTPCN KTSKKQKGKV  720
GTPNSQKDNT TDQGSNDTPQ SKTCKKPNAK VDTLNSQNVR RSSRLQNQG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105110KKRKRR
2105112KKRKRRKK
3105113KKRKRRKKK
4106111KRKRRK
5107113RKRRKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346339.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_006346341.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_006346342.10.0PREDICTED: pathogenesis-related homeodomain protein
TrEMBLA0A2G3BVH90.0A0A2G3BVH9_CAPCH; Uncharacterized protein
STRINGSolyc01g107410.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.15e-91Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain