PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00751.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

SRS

Protein Properties

Length: 468aa MW: 49960.1 Da PI: 8.488

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00751.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	211.5	2.1e-65	253	418	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqs 84 +++CqdCGnqakkdC+h+RCRtCCksrg++C+th+kstWvpa++rrerq + + a+++ + a +++++k++r +s++++ Sme2.5_00751.1_g00003.1 253 SSTCQDCGNQAKKDCTHRRCRTCCKSRGYECSTHLKSTWVPASRRRERQLMGSGAAKNVNVIAagsssqSTSSAKKPRLVNSQTTT 338 679*******************************************98877666554433345555577888899999999999 PP DUF702 85 alsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++s+t++s+++++++++tss lP +v+++avf+cvrv+svd+ge+e+aYq +v igGhvfkG+LydqGl++ Sme2.5_00751.1_g00003.1 339 TASHTSTSNNTPPRSFDTSSshqdgsfkgsLPGQVRAPAVFKCVRVTSVDEGEDEYAYQGVVRIGGHVFKGFLYDQGLDH 418 **************999*******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.1E-61	254	417	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.0E-26	255	297	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.7E-28	369	416	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MGALRDSNKE ENYSIVQLVK EEKKKWPSEE RSLLKRPFRL QVPLLEEKKE NPFNVADCGR 60 SISIVSVRSS EAAARRRREK EDSVAVLPTV SPVTVATARR LLQASDSGAF ADWVANSSNT 120 SAAAAIGDLS LGFNAGGGGG NVTAAGGGGG GGHSGMWSAS SSSRQMQINY GLQSEMGMFV 180 VHPASFHHHH QQQQENSINF ESINGNNSNL SNTSLGVGVI PLLTATPLTN MVSFDDEDLV 240 SRNNRGGNDA SFSSTCQDCG NQAKKDCTHR RCRTCCKSRG YECSTHLKST WVPASRRRER 300 QLMGSGAAKN VNVIAAGSSS QSTSSAKKPR LVNSQTTTTA SHTSTSNNTP PRSFDTSSSH 360 QDGSFKGSLP GQVRAPAVFK CVRVTSVDEG EDEYAYQGVV RIGGHVFKGF LYDQGLDHHE 420 PKDNNNFPNL SDLHLGAAAN EHNSHLYVPA ASAGGGLLGG SNYGNQIN

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MGALRDSNKE ENYSIVQLVK EEKKKWPSEE RSLLKRPFRL QVPLLEEKKE NPFNVADCGR  60
SISIVSVRSS EAAARRRREK EDSVAVLPTV SPVTVATARR LLQASDSGAF ADWVANSSNT  120
SAAAAIGDLS LGFNAGGGGG NVTAAGGGGG GGHSGMWSAS SSSRQMQINY GLQSEMGMFV  180
VHPASFHHHH QQQQENSINF ESINGNNSNL SNTSLGVGVI PLLTATPLTN MVSFDDEDLV  240
SRNNRGGNDA SFSSTCQDCG NQAKKDCTHR RCRTCCKSRG YECSTHLKST WVPASRRRER  300
QLMGSGAAKN VNVIAAGSSS QSTSSAKKPR LVNSQTTTTA SHTSTSNNTP PRSFDTSSSH  360
QDGSFKGSLP GQVRAPAVFK CVRVTSVDEG EDEYAYQGVV RIGGHVFKGF LYDQGLDHHE  420
PKDNNNFPNL SDLHLGAAAN EHNSHLYVPA ASAGGGLLGG SNYGNQIN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	79	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	1e-102	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006356361.1	1e-156	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	3e-77	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	M1AK47	1e-174	M1AK47_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400024438	1e-175	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7655	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	9e-70	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]