PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00789.1_g00012.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family S1Fa-like
Protein Properties Length: 86aa    MW: 9648.45 Da    PI: 10.3062
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00789.1_g00012.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA127.15.2e-402086470
                     S1FA  4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                               ve+kG+nPG++vl++vggl+l+fl+gny+ly+yaqk+lPP+kkkP+skkk+k+e+lkqGv++PGe
  Sme2.5_00789.1_g00012.1 20 RDVEVKGFNPGVLVLILVGGLVLTFLIGNYLLYMYAQKTLPPKKKKPISKKKMKKERLKQGVSAPGE 86
                             579***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190130.012186No hitNo description
PfamPF046898.9E-392286IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MDFEDHDSPP SFDNVKNMAR DVEVKGFNPG VLVLILVGGL VLTFLIGNYL LYMYAQKTLP  60
PKKKKPISKK KMKKERLKQG VSAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009627553.13e-32PREDICTED: DNA-binding protein S1FA-like
RefseqXP_009781429.13e-32PREDICTED: DNA-binding protein S1FA-like
RefseqXP_016432997.13e-32PREDICTED: DNA-binding protein S1FA-like
RefseqXP_016471310.13e-32PREDICTED: DNA-binding protein S1FA-like
SwissprotQ423372e-14S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLA0A1S3WZD46e-31A0A1S3WZD4_TOBAC; DNA-binding protein S1FA-like
TrEMBLA0A1S4A3X36e-31A0A1S4A3X3_TOBAC; DNA-binding protein S1FA-like
TrEMBLA0A1U7X3I16e-31A0A1U7X3I1_NICSY; DNA-binding protein S1FA-like
STRINGXP_009781429.11e-31(Nicotiana sylvestris)
STRINGXP_009627553.11e-31(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249