PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00789.1_g00016.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 158aa    MW: 18165.4 Da    PI: 5.8306
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00789.1_g00016.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.22.1e-181462149
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             k ie++  r +tfskR++g++KKA E S+L++a+v v++fs++g+ + y
  Sme2.5_00789.1_g00016.1 14 KLIESEKARFITFSKRKKGLFKKADEYSTLTGADVGVLLFSPSGRPHSY 62
                             569*****************************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.894666IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-25665IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-24779IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-15828IPR002100Transcription factor, MADS-box
PfamPF003191.6E-221662IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-152843IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-154364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MEKRTNGRQK IELKLIESEK ARFITFSKRK KGLFKKADEY STLTGADVGV LLFSPSGRPH  60
SYGSKSVKEI TDKFLGLKQD DSQGDDANEG ESNVFDAFED IRKEKQALDE KEKEHPRSDI  120
LSDKHRLEEY MALQSRLDKV YKDIKGKCVV EPEEEESF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541017.15e-54PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A2G2YQP51e-53A0A2G2YQP5_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000865541e-51(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-23AGAMOUS-like 61