PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00827.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 579aa    MW: 65200.8 Da    PI: 7.547
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00827.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.53.7e-21446542295
                              EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                       B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 
                              +kvl++sdv+++gr+vlpkk ae+h  +++++ ++ +++ed  ++r+W++k+++  ++ks++y+l+ ++ +Fv+angL+egDf+v+
  Sme2.5_00827.1_g00006.1 446 QKVLKQSDVGNLGRIVLPKKEAENHlpQLETRDGISISMEDiGTSRVWNMKYRFwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVI 530
                              79*************************99999*********7778*******99777777777777.******************* PP

                              EE-SS.SEE..EEE CS
                       B3  83 kldgr.sefelvvk 95 
                              +  ++ ++++++++
  Sme2.5_00827.1_g00006.1 531 Y--SNiKCGKYLIR 542
                              *..67799988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-28439549IPR015300DNA-binding pseudobarrel domain
CDDcd100151.03E-33443544No hitNo description
SuperFamilySSF1019361.88E-22444533IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.4E-18445547IPR003340B3 DNA binding domain
PROSITE profilePS5086310.884445547IPR003340B3 DNA binding domain
PfamPF023623.7E-17446541IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MKRGLNELYY GGNNEDVNGF ENINMVSSVN DDIHPTDFDP MDDTDIWLNG NFSTDFTSLQ  60
DIPCMSSSSS NSNSLPTDQS DPSSNWTVLK SDADEQDFDK KIDTIRDQEC LNVMDLIDGD  120
SEFLDPTISF FHNGENEQLK EEANDQEVSI FQADSELALM FFEWLKQNRD YISAEDMRSI  180
TLKRSTIESA SRRLGSTKEG KKQLLRLILD WVEQHRLQKK QMREEQSLQN SVPYNLNPNG  240
CFYNAPFPDS TPVLTGPIQR YNGDPYSNGS LFAPPLNQTM SRTTSSSASA DYQPMDTSQS  300
WSSSQFTIAT ASHSNPFGGN GDRLARLGSC ATKEARKNRM ARQRRVPVHH YRHQTQNQTQ  360
ISNEKSVMMG GKINNCALSQ ANNQRNWVYW PSAAAAPPVS MVTLADTPQA QPMERPALKS  420
QKHQKHGSAD KRQACKTEKN LKFLLQKVLK QSDVGNLGRI VLPKKEAENH LPQLETRDGI  480
SISMEDIGTS RVWNMKYRFW PNNKSRMYLL ENTGDFVRAN GLQEGDFIVI YSNIKCGKYL  540
IRGVKVRPNG AKSDGTQPAK KNVRKTAVAA SSPFAQAVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A4e-374415451105B3 domain-containing transcription factor FUS3
6j9b_D4e-374415451105B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9113990.0AY911399.1 Lycopersicon esculentum ABI3 (ABI3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352828.10.0PREDICTED: B3 domain-containing transcription factor ABI3-like
TrEMBLM1BS610.0M1BS61_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000517460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.17e-83B3 family protein