PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00835.1_g00019.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 229aa    MW: 25261.8 Da    PI: 9.4591
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00835.1_g00019.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26083.14.1e-264107199
                   DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                              +C++C+vlr++C+++C + p++     p++q++++ +++k++G++ +l+l++a p++ r+++++sl+yeA+ r+ +P+yG+++  +
  Sme2.5_00835.1_g00019.1   4 SCNGCRVLRKGCNEKCSIKPCLqwiqsPEAQSNATLFLAKFYGRAGLLNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSTAARR 89 
                              6************************************************************************************* PP

                   DUF260  82 klqqqleqlkaelallke 99 
                              +l+ +  +l+ + al+ +
  Sme2.5_00835.1_g00019.1  90 SLSFRPTRLRMQRALRSK 107
                              ******999999888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.9443109IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-204101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCNEKCS IKPCLQWIQS PEAQSNATLF LAKFYGRAGL LNLINAGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSTAARRS LSFRPTRLRM QRALRSKHVT FATCPRKTTP  120
MPICTRLRRE PGSSGFSSKP QPRKQSPDVN DAARVMWSWC HKEEEEAVGS PSLNSGLSQQ  180
RTEEPSREGE SGDADSGSVE TVEASVVKVD ESSDVGLELT LGLLPLIRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235815.11e-110LOB domain-containing protein 40
TrEMBLA0A3Q7FWA61e-109A0A3Q7FWA6_SOLLC; Uncharacterized protein
STRINGSolyc03g119530.2.11e-110(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-54LOB domain-containing protein 41